Factsheet for PGSC0003DMT400032373

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g062660.2.1	Tomato	nucleus	93.79	92.42
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	25.1	59.81
PGSC0003DMT400039787	Potato	nucleus	55.6	58.52
GSMUA_Achr10P...	Banana	nucleus, plastid	31.85	52.8
PGSC0003DMT400061998	Potato	cytosol	8.1	51.28
VIT_19s0014g01650.t01	Wine grape	nucleus	40.89	50.75
PGSC0003DMT400027387	Potato	nucleus	38.33	49.31
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	34.01	49.03
GSMUA_Achr11P...	Banana	nucleus	27.8	48.7
Zm00001d008922_P001	Maize	plastid	30.63	46.33
Os01t0214300-01	Rice	cytosol, nucleus	10.26	45.78
EES02258	Sorghum	plastid	26.32	43.72
TraesCS3D01G146600.1	Wheat	nucleus, plastid	29.55	43.28
CDY66497	Canola	nucleus	9.04	43.23
CDX82101	Canola	nucleus	10.66	43.17
TraesCS3A01G140500.1	Wheat	nucleus, plastid	29.55	42.94
TraesCS3B01G164100.1	Wheat	nucleus, plastid	29.42	42.75
CDX83890	Canola	nucleus, plastid	20.92	42.35
CDX96751	Canola	nucleus, plastid	20.65	41.8
Bra008074.1-P	Field mustard	nucleus, plastid	21.86	41.33
CDY48040	Canola	nucleus, plastid	21.86	41.33
Bra025948.1-P	Field mustard	mitochondrion	22.94	41.06
HORVU6Hr1G045030.1	Barley	nucleus	34.95	40.92
CDY19175	Canola	nucleus, plastid	21.19	40.89
HORVU6Hr1G045070.4	Barley	nucleus	35.09	40.88
CDY26215	Canola	mitochondrion	22.81	40.82
TraesCS6D01G177700.1	Wheat	cytosol, plastid	34.68	40.47
GSMUA_Achr1P11660_001	Banana	nucleus	27.8	40.16
Bra031004.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	19.16	40.0
AT1G73150.1	Thale cress	plastid	24.7	39.7
Zm00001d016131_P006	Maize	nucleus	35.76	39.49
Os02t0250300-01	Rice	nucleus	34.95	39.48
CDX82103	Canola	plastid	16.46	38.98
CDY26219	Canola	nucleus	9.72	38.71
Bra016586.1-P	Field mustard	nucleus, plastid	22.67	38.18
AT1G17790.1	Thale cress	nucleus, plastid	24.97	37.99
OQU84709	Sorghum	nucleus	36.3	37.78
CDY21732	Canola	cytosol	12.15	35.43
Zm00001d053427_P007	Maize	nucleus	31.85	34.55
CDX81848	Canola	cytosol, nucleus, plastid	10.93	29.45
PGSC0003DMT400008041	Potato	nucleus	22.54	27.74
PGSC0003DMT400078795	Potato	nucleus	20.24	25.34
PGSC0003DMT400044321	Potato	nucleus	12.15	23.87
Zm00001d039369_P004	Maize	plastid	28.48	22.52
PGSC0003DMT400039290	Potato	nucleus	21.19	19.97
PGSC0003DMT400052108	Potato	nucleus	16.87	17.15
PGSC0003DMT400018643	Potato	nucleus	13.5	16.5

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:102601488	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf
InterPro:Bromodomain_CS	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GTE_bromo
InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M1AXB3	InterPro:NET_dom
InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	EnsemblPlantsGene:PGSC0003DMG401012433	PGSC:PGSC0003DMG401012433	EnsemblPlants:PGSC0003DMT400032373
PRINTS:PR00503	ScanProsite:PS00633	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147
SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0002950D18	RefSeq:XP_006348285.1	SEG:seg	:

Description

Bromodomain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG401012433]

Coordinates

chr7:-:52795852..52801295

Molecular Weight (calculated)

81657.6 Da

IEP (calculated)

6.882

GRAVY (calculated)

-0.847

Length

741 amino acids

Sequence
(BLAST)

001: MDSDANDLNS RNRLRWGDNY KVYTRKRRRT LENTSTDVVP AATATVSSAA AAPEVSNSGR DTNENDDVPE PSLQTQFRDC STLKGGTGGE QVAVSNGGEV
101: RELTEDSCGR DEPRDGGVGP LVEHRDGESA EGSCGRDVPE VGRGIDTGAA VVVSSGGEVP EGSSGSQPAM QNHRNEPQSD NLEMENGYGK PVISRIKDRI
201: RINLTGVRSS DEIRELGMSL ESELDQVRGL VKQLEAKQLQ LTTYRTSING GNINAGSVTT FPGSITTVPG GSISSYSHPQ YMDDGVIKNR SLARMNSEVR
301: SAGHIGSRPF QRPNFLIVEN SNGSTDFVEK EKRTPKANQF YRNSEFLLGK DRLPPESNKR LKTNGSGKKH SANSENGFGL DKHRLQVFRN CSSLLQRLMK
401: HKHGWVFNEP VNVKSLGLHD YHDIIKHPMD LGTIKTRLSE DWYKSPMEFA EDVRLVFRNA MTYNPRGQDV HVMAEQLSEI FEERWAVIEA EYNSDWRYQT
501: YHDVGAPTPT SRMTSYAPPF LHTPVSSRSL APHARQLHPL DRSESMTRPV NPKMKTSNIA HVTRTPVPKK PKAKDLNKRD MTYEEKQKLS TNLQNLPSEK
601: LDAIVQIIKK RNTALSQDND EIEVDIDSVD AETLWELDRF VTNFKKSFSK YKRKAELLRA REGAAQTARN VNPTSMVADA LKENGTGEKD TTPATLEGGR
701: PADSASSSSS SSSSDSGSSS SDSDSDSSSA SGSEAAQSPR T

Best Arabidopsis Sequence Match ( AT1G73150.2 )
(BLAST)

001: MASGPIAGGG VSKTKHKWSD SGNKSQKRSK PTVANSNSLG LEDNHQMMKI SLSSISKLEV RNLKRKLQAE LEEVRSLIKR LEPQGNNFAP VPNKKLKTAN
101: GGKKGGVHGA AADKGTVQIL KSCNNLLTKL MKHKSGWIFN TPVDVVTLGL HDYHNIIKEP MDLGTVKTRL SKSLYKSPLE FAEDVRLTFN NAMLYNPVGH
201: DVYHMAEILL NLFEEKWVPL ETQYELLIRK QQPVRDIDFH APVSTNTHNV EALPLPAPTP SLSPPPPPKV VENRTLERAE SMTNPVKPAV LPVVPEKLVE
301: EASANRDLTF DEKRQLSEDL QDLPYDKLEA VVQIIKKRTP ELSQQDDEIE LDIDSLDLET LWELFRFVTE YKESLSKKKE EQGLDSERDA ESFHNSVHES
401: NTLVTGLESS KVTELGEILI LKIVSSSSIL VV

Arabidopsis Description

GTE3Transcription factor GTE3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.