CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48040	Canola	nucleus, plastid	76.68	61.22
CDX82101	Canola	nucleus	33.87	57.92
CDY21732	Canola	cytosol	42.17	51.97
CDX83890	Canola	nucleus, plastid	59.11	50.55
CDX96751	Canola	nucleus, plastid	57.83	49.45
CDY66497	Canola	nucleus	24.28	49.03
CDY19175	Canola	nucleus, plastid	59.74	48.7
AT1G73150.1	Thale cress	plastid	70.61	47.94
CDY26219	Canola	nucleus	28.43	47.85
CDY26215	Canola	mitochondrion	53.67	40.58
CDX81848	Canola	cytosol, nucleus, plastid	35.14	40.0
GSMUA_Achr11P...	Banana	nucleus	45.69	33.81
CDY15568	Canola	nucleus	32.27	31.86
GSMUA_Achr10P...	Banana	nucleus, plastid	41.85	29.31
EES02258	Sorghum	plastid	39.94	28.03
CDY08771	Canola	nucleus	31.63	27.97
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	44.41	27.04
CDY65656	Canola	cytosol	17.57	26.57
Zm00001d008922_P001	Maize	plastid	41.53	26.53
TraesCS3D01G146600.1	Wheat	nucleus, plastid	41.85	25.89
TraesCS3B01G164100.1	Wheat	nucleus, plastid	41.85	25.69
TraesCS3A01G140500.1	Wheat	nucleus, plastid	41.85	25.69
GSMUA_Achr1P11660_001	Banana	nucleus	39.62	24.17
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	23.96	24.12
CDY65645	Canola	nucleus, plastid	36.42	22.4
VIT_19s0014g01650.t01	Wine grape	nucleus	41.85	21.94
Os02t0250300-01	Rice	nucleus	39.94	19.05
CDX70357	Canola	plastid	23.64	18.83
Os01t0214300-01	Rice	cytosol, nucleus	9.9	18.67
TraesCS6D01G177700.1	Wheat	cytosol, plastid	37.7	18.58
HORVU6Hr1G045030.1	Barley	nucleus	37.38	18.48
CDY09981	Canola	nucleus	37.7	18.47
HORVU6Hr1G045070.4	Barley	nucleus	37.38	18.4
Zm00001d016131_P006	Maize	nucleus	39.3	18.33
CDY06203	Canola	nucleus	37.06	18.01
CDX78390	Canola	nucleus	13.74	17.99
CDX86532	Canola	nucleus	39.94	17.73
Zm00001d053427_P007	Maize	nucleus	38.02	17.42
CDX70356	Canola	nucleus, plastid	13.74	17.41
CDY31648	Canola	nucleus	23.32	17.18
OQU84709	Sorghum	nucleus	38.98	17.13
Solyc12g014170.1.1	Tomato	nucleus	38.02	16.98
CDX90608	Canola	cytosol	19.17	16.85
CDX84278	Canola	nucleus	23.32	16.67
PGSC0003DMT400039787	Potato	nucleus	37.38	16.62
CDY29075	Canola	cytoskeleton, cytosol, nucleus	19.17	16.48
PGSC0003DMT400032373	Potato	nucleus	38.98	16.46
Solyc07g062660.2.1	Tomato	nucleus	38.98	16.22
Zm00001d039369_P004	Maize	plastid	41.53	13.87
CDY72432	Canola	cytosol	22.36	13.86
CDY68605	Canola	cytosol	23.96	13.66
CDY20057	Canola	nucleus	26.52	12.87
CDY43984	Canola	endoplasmic reticulum	12.78	9.15
CDX84396	Canola	nucleus	16.29	8.32
CDY48139	Canola	nucleus	19.49	6.9
CDY16729	Canola	nucleus	22.36	6.13
CDY13699	Canola	nucleus	8.31	5.69
CDX83673	Canola	nucleus	8.31	5.22

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	EnsemblPlants:CDX82103
ProteinID:CDX82103	ProteinID:CDX82103.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00137142001	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	InterPro:NET_dom
InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525
PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0004EDC67A	:

Description

BnaC02g21870D

Coordinates

chrLK031827:+:768437..769699

Molecular Weight (calculated)

35448.3 Da

IEP (calculated)

6.330

GRAVY (calculated)

-0.468

Length

313 amino acids

Sequence
(BLAST)

001: MASGAIAGGG VSKTKHKRSS KRLKPTTAAR LVSPSNSLGS DVNRQMMKIS LNSISKLEVR NLKRKLTSDL EKVRNLINRL EPHKFGSIFN TPVDAVKSGL
101: HDYHTIVKKP MDLGTVKTRL SKSWYESPLE FAEDVRLTFN NALLYNPVGH DVHRMAELLL SMFEDQYESL NKEASGNRDL AFEEKPRLSE DLQDLPFDKL
201: EEVVEIIKKT KPELAQQDDE IELHIDSLDL ETLWELYRFV TGYKESLGNK KEEQGLSSER EAESVHNGVQ EPNTLVTGPE STKVTELGEI LVYKYYISLF
301: SLTAINSLLL FCF

Best Arabidopsis Sequence Match ( AT1G17790.1 )
(BLAST)

001: MSSEHISGGG ASKTKKHKWS SSQNRPKPMG VSRQERSVPL VSPSNSFASE DDHHMLKISL SSISKLEVRN LKRKLKSELD EVRSLIKRFD PEANPGGSMA
101: KSGVVGRSKK VKTGNGGGKK SGHGADKGTV QIFKNCNSLL TKLMKHKSAW VFNVPVDAKG LGLHDYHNIV KEPMDLGTVK TKLGKSLYKS PLDFAEDVRL
201: TFNNAILYNP IGHDVYRFAE LLLNMFEDKW VSIEMQYDNL HRKFKPTRDI EFPAPAPSIA PIVEPLPAIV PSPSPSSPPP PPPPPVAAPV LENRTWEREE
301: SMTIPVEPEA VITAPEKAEE EEAPVNNRDL TLEEKRRLSE ELQDLPYDKL ETVVQIIKKS NPELSQKDDE IELDIDSLDI NTLWELYRFV TGYKESLSKK
401: NEAHGFGSER DAESVHNSIQ EPTTLVSGTT TSRVTESGKA IRTSSPARQE NNASGSSSSN SSSSDSGSCS SDTDSDSSSG RGSDNGN

Arabidopsis Description

GTE5Transcription factor GTE5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.