CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022044.1-P	Field mustard	nucleus	90.16	75.05
AT5G46550.1	Thale cress	cytosol	53.09	46.96
EER97261	Sorghum	nucleus	26.09	23.41
KRH11112	Soybean	nucleus	29.75	23.01
KRH21136	Soybean	nucleus	29.29	22.61
TraesCS7A01G539800.2	Wheat	nucleus, plastid	27.46	21.86
TraesCS7D01G526000.1	Wheat	nucleus, plastid	27.0	21.85
TraesCS7B01G461100.3	Wheat	nucleus, plastid	27.23	21.75
Solyc02g071510.2.1	Tomato	nucleus	29.06	21.64
VIT_10s0003g02240.t01	Wine grape	nucleus	27.69	21.12
PGSC0003DMT400018643	Potato	nucleus	28.83	20.79
CDY13699	Canola	nucleus	21.05	20.13
EES09393	Sorghum	nucleus	26.32	19.01
Zm00001d004790_P008	Maize	nucleus	24.26	18.34
Os07t0507700-01	Rice	nucleus	25.17	18.3
CDX83673	Canola	nucleus	20.82	18.27
GSMUA_Achr4P27780_001	Banana	nucleus	27.46	17.8
CDX84396	Canola	nucleus	24.94	17.78
CDY15568	Canola	nucleus	12.59	17.35
Zm00001d053022_P001	Maize	nucleus	24.26	17.29
CDY20057	Canola	nucleus	25.17	17.05
HORVU7Hr1G118300.1	Barley	cytosol	25.63	15.73
CDY66497	Canola	nucleus	5.49	15.48
CDY65656	Canola	cytosol	7.32	15.46
CDY08771	Canola	nucleus	12.36	15.25
CDX82101	Canola	nucleus	6.18	14.75
HORVU4Hr1G055510.6	Barley	cytosol, nucleus, plastid	7.55	14.47
CDX96751	Canola	nucleus, plastid	11.9	14.21
CDY21732	Canola	cytosol	8.24	14.17
CDX83890	Canola	nucleus, plastid	11.67	13.93
CDY19175	Canola	nucleus, plastid	12.13	13.8
CDY48040	Canola	nucleus, plastid	11.67	13.01
CDX78390	Canola	nucleus	7.09	12.97
CDY26219	Canola	nucleus	5.49	12.9
CDY26215	Canola	mitochondrion	12.13	12.8
CDX82103	Canola	plastid	9.15	12.78
CDX70356	Canola	nucleus, plastid	7.09	12.55
CDY48139	Canola	nucleus	22.65	11.2
CDY29075	Canola	cytoskeleton, cytosol, nucleus	8.92	10.71
CDX90608	Canola	cytosol	8.7	10.67
CDY65645	Canola	nucleus, plastid	12.13	10.41
CDY16729	Canola	nucleus	26.77	10.25
CDY31648	Canola	nucleus	9.84	10.12
CDX84278	Canola	nucleus	9.84	9.82
EES09391	Sorghum	cytosol, mitochondrion, nucleus	9.15	9.2
CDY06203	Canola	nucleus	13.04	8.85
CDY09981	Canola	nucleus	12.81	8.76
CDX86532	Canola	nucleus	13.27	8.23
CDX70357	Canola	plastid	6.18	6.87
CDX81848	Canola	cytosol, nucleus, plastid	4.12	6.55
CDY72432	Canola	cytosol	7.09	6.14
CDY68605	Canola	cytosol	6.86	5.46

Protein Annotations

EnsemblPlants:CDY43984	EnsemblPlantsGene:GSBRNA2T00079374001	Gene3D:1.20.920.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:Bromodomain-like_sf	InterPro:IPR036427	ncoils:Coil	PANTHER:PTHR22880	PANTHER:PTHR22880:SF153	ProteinID:CDY43984
ProteinID:CDY43984.1	SEG:seg	SUPFAM:SSF47370	UniParc:UPI0004EDC29A	UniProt:A0A078I332	MapMan:35.1

Description

BnaA02g24620DTranscription factor GTE12 [Source:Projected from Arabidopsis thaliana (AT5G46550) UniProtKB/Swiss-Prot;Acc:Q9LS28]

Coordinates

chrLK032575:-:233167..235790

Molecular Weight (calculated)

49190.0 Da

IEP (calculated)

7.264

GRAVY (calculated)

-0.563

Length

437 amino acids

Sequence
(BLAST)

001: MIWFMCPFKE ELNLMIGVSV LFRLQPCYVR VMKMLKSSAD EFAADVRLTF DNALTYNPPE NFVHDVAKEL QVIFEARWES LRKKKVSDLH GEKVTEGSSF
101: RRQPVEVGWI RQSSPETSAS SGRFSVELPK QAKEKSQKVP LLLKPVTKLS KKDTPVVTPA ALATKLRIKK FEQGHGSTVE NPSKGLIPTS ACKCSSCGRI
201: TCRCLKSCNS SGSEVSTLTD NLVKDNSCSQ ASESDPHSNG SISSKNDCVS SQLDTPLDNG KLSFLSYELK KPLPPMPPLP PEKAIRAAIL KCQFAETILK
301: AKHRKVLDKS NKSDLIRIQI EKEQMEKTQR EEKARIEAEI AAAKLATRMR AEAELKEKRE RERLKLEKMV KEVDLEENNA SKFNENMINL CGSCDPTRTW
401: LPELGLFLRN DDDDSDEDDS EVFDAMRIDD LEEGEIL

Best Arabidopsis Sequence Match ( AT5G46550.1 )
(BLAST)

001: MVAIPNIKIK FGPQGSVRTF QTLSDSSKKI EHVVTEDLSQ SSEKSKKRGG PKELDEVQPK KKQRLDCDWS SQCLALLRFL MEHRGGWLFK EPVDPVKMEI
101: PDYFNVIQKP MDLGTVKSKL LKNVYSNADE FAADVRLTFA NAMHYNPLWN EVHTIAKEIN EIFEVRWESL MKKKVLRLSW NEVREGYKRQ PVERDCSRRS
201: STGTSASSGV GLTKPAKENS EKGSLSSKPV KVQSKKNTPA VTPKALATCK CGRIICICLK SCSSFGSDVC SLTDCQLKNI SGAQASELDP QSNGSDTSKK
301: ERNGSLKSQL DKPSNSDLLG NELKTAFPAL PPVPPEKALR AAILKAQYAG TIIKAKHRIV LGQNNKADLI RIQIEKEQME RAQREEKARI EAEMRAAKVA
401: ERMRAQDELK QKRESQRLEI AKMKKGFDFE RNNHSKLKKK FVKVCGCFSL TKARLLLEEL GLVLKNDYCP ELEVIGSEKF DAMRMDDLEE GEIL

Arabidopsis Description

GTE12Transcription factor GTE12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.