CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytoskeleton, cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90608	Canola	cytosol	92.86	94.94
Bra012810.1-P	Field mustard	cytosol	92.58	94.66
AT3G52280.2	Thale cress	nucleus	77.75	73.32
Solyc09g015660.2.1	Tomato	cytosol	52.47	52.91
KRH04734	Soybean	nucleus	53.85	51.72
VIT_13s0019g03950.t01	Wine grape	nucleus	50.55	47.67
TraesCS1B01G385900.1	Wheat	cytosol	41.48	44.15
TraesCS1A01G367300.1	Wheat	cytosol	42.03	43.84
EER87804	Sorghum	nucleus	41.48	43.64
TraesCS1D01G373000.1	Wheat	cytosol	42.31	42.9
TraesCS7A01G080900.1	Wheat	nucleus	40.66	42.17
TraesCS7D01G074500.1	Wheat	cytosol	40.38	41.88
HORVU5Hr1G097840.6	Barley	cytosol	40.11	41.71
TraesCS4A01G377900.2	Wheat	cytosol	40.11	41.6
Zm00001d036092_P004	Maize	endoplasmic reticulum, nucleus, plastid	41.48	41.37
Os06t0138000-01	Rice	cytosol, nucleus	14.01	41.13
GSMUA_Achr8P29340_001	Banana	nucleus	43.96	40.92
HORVU7Hr1G018300.6	Barley	cytosol	39.29	40.62
CDY31648	Canola	nucleus	39.56	33.88
CDX84278	Canola	nucleus	39.29	32.65
GSMUA_Achr8P34430_001	Banana	nucleus	35.99	30.47
CDY15568	Canola	nucleus	17.58	20.19
CDX82101	Canola	nucleus	9.89	19.67
CDX82103	Canola	plastid	16.48	19.17
CDY21732	Canola	cytosol	13.19	18.9
CDX83890	Canola	nucleus, plastid	18.68	18.58
CDX96751	Canola	nucleus, plastid	18.68	18.58
CDY19175	Canola	nucleus, plastid	18.68	17.71
CDY65656	Canola	cytosol	9.89	17.39
CDY48040	Canola	nucleus, plastid	18.41	17.09
CDY26215	Canola	mitochondrion	18.96	16.67
CDY08771	Canola	nucleus	15.66	16.1
CDY66497	Canola	nucleus	5.77	13.55
CDY65645	Canola	nucleus, plastid	17.31	12.38
CDY26219	Canola	nucleus	6.32	12.37
CDY09981	Canola	nucleus	20.33	11.58
CDY06203	Canola	nucleus	20.33	11.49
CDX70357	Canola	plastid	11.81	10.94
CDX86532	Canola	nucleus	20.33	10.5
CDY20057	Canola	nucleus	17.86	10.08
CDY72432	Canola	cytosol	13.74	9.9
CDX81848	Canola	cytosol, nucleus, plastid	7.42	9.82
CDY68605	Canola	cytosol	14.01	9.29
CDX78390	Canola	nucleus	6.04	9.21
CDY43984	Canola	endoplasmic reticulum	10.71	8.92
CDX70356	Canola	nucleus, plastid	6.04	8.91
CDX84396	Canola	nucleus	10.99	6.53
CDY13699	Canola	nucleus	7.42	5.91
CDX83673	Canola	nucleus	7.42	5.42
CDY48139	Canola	nucleus	12.91	5.32
CDY16729	Canola	nucleus	15.11	4.82

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	UniProt:A0A078GRG0	InterPro:Bromodomain	InterPro:Bromodomain-like_sf
EnsemblPlants:CDY29075	ProteinID:CDY29075	ProteinID:CDY29075.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00041819001	InterPro:GTE1/GTE6
InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	InterPro:NET_dom	InterPro:NET_sf
PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880
PANTHER:PTHR22880:SF163	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0004EE4BC5	SEG:seg	:

Description

BnaC07g32810DBnaC07g32810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRG0]

Coordinates

chrLK032229:-:449417..451368

Molecular Weight (calculated)

41961.2 Da

IEP (calculated)

6.272

GRAVY (calculated)

-0.644

Length

364 amino acids

Sequence
(BLAST)

001: MTESVPESGH IPAGESKIIP VEAESIKQRV EEVVQWVDSL EHKLTEVENF YSTIALSNSA SRHVVGIRKV QQEAARREAV AAKRMHDLMR QFGTIFRQIT
101: QHKCAWPFMH PVDVESLGLD DYYEVIDEPM DFSTIKNQMD AKDGTGYKHV MQIYADMRLV FENAMKYNEE ASDVYSMAKT LLQKFEEKWA HFLPKVLEEE
201: KIREEEEKQS AMEALLAKEA SHTKTTRDLS NEICNVNDEL EKLRQVVVGR CRKITSEEKR NIGFALLKLS TDELQKVLGI VAQADPRFQT RAEEVTIEMD
301: VLDEPTLWRL KFLVKDALEN ATNKKKEEKI KTGECRGTKQ NNEVSNKRNA VNKLAERRTK RPCL

Best Arabidopsis Sequence Match ( AT3G52280.1 )
(BLAST)

001: MADSVPGHVA GGGLQGFSVD AECIKQRVDE VLQWVDSLEH KLKEVEEFYS SIGVSNSGSI GKDTEKGRHV VGIRKIQQEA ARREAVAAKR MQDLMRQFGT
101: IFRQITQHKC AWPFMHPVNV EGLGLHDYFE VIDKPMDFST IKNQMEAKDG TGYKHVMQIY ADMRLVFENA MNYNEETSDV YSMAKKLLEK FEEKWAHFLP
201: KVQEEEKIRE EEEKQAAKEA LLAKEASHIK TTRELGNEIC HANDELEKLM RKVVERCRKI TIEEKRNIGL ALLKLSPDDL QKVLGIVAQA NPSFQPRAEE
301: VSIEMDILDE PTLWRLKFFV KDALDNAMKK KKEEETKTRE LSGAQKKEVS KKRNATTKLA ERKTKRSRI

Arabidopsis Description

GTE6General transcription factor group E6 [Source:UniProtKB/TrEMBL;Acc:F4J6V6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.