CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31648	Canola	nucleus	94.75	97.65
AT2G34900.1	Thale cress	nucleus	73.06	82.9
Bra034451.1-P	Field mustard	cytosol	75.11	62.31
Solyc09g090370.2.1	Tomato	nucleus	40.18	50.87
KRH45305	Soybean	nucleus	42.47	50.68
Os06t0138000-01	Rice	cytosol, nucleus	13.93	49.19
PGSC0003DMT400044321	Potato	nucleus	41.78	48.54
KRH37141	Soybean	cytosol, nucleus	28.77	46.15
TraesCS1B01G385900.1	Wheat	cytosol	34.93	44.74
TraesCS1A01G367300.1	Wheat	cytosol	35.62	44.7
TraesCS7A01G080900.1	Wheat	nucleus	35.16	43.87
TraesCS1D01G373000.1	Wheat	cytosol	35.84	43.73
EER87804	Sorghum	nucleus	34.47	43.64
TraesCS4A01G377900.2	Wheat	cytosol	34.93	43.59
TraesCS7D01G074500.1	Wheat	cytosol	34.7	43.3
HORVU5Hr1G097840.6	Barley	cytosol	34.47	43.14
KRH12139	Soybean	nucleus	34.02	42.69
HORVU7Hr1G018300.6	Barley	cytosol	34.25	42.61
GSMUA_Achr8P29340_001	Banana	nucleus	37.21	41.69
Zm00001d036092_P004	Maize	endoplasmic reticulum, nucleus, plastid	34.02	40.82
CDX90608	Canola	cytosol	31.96	39.33
CDY29075	Canola	cytoskeleton, cytosol, nucleus	32.65	39.29
GSMUA_Achr8P34430_001	Banana	nucleus	34.93	35.58
CDX82101	Canola	nucleus	10.5	25.14
CDX82103	Canola	plastid	16.67	23.32
CDY15568	Canola	nucleus	16.21	22.4
CDX96751	Canola	nucleus, plastid	17.58	21.04
CDY19175	Canola	nucleus, plastid	18.04	20.57
CDX83890	Canola	nucleus, plastid	17.12	20.49
CDY21732	Canola	cytosol	11.64	20.08
CDY48040	Canola	nucleus, plastid	17.81	19.9
CDY65656	Canola	cytosol	9.36	19.81
CDY08771	Canola	nucleus	15.75	19.49
CDY26215	Canola	mitochondrion	17.81	18.84
CDY66497	Canola	nucleus	5.94	16.77
CDY26219	Canola	nucleus	6.62	15.59
CDY65645	Canola	nucleus, plastid	16.44	14.15
CDX70357	Canola	plastid	12.33	13.74
CDX81848	Canola	cytosol, nucleus, plastid	7.99	12.73
CDY06203	Canola	nucleus	18.49	12.58
CDY09981	Canola	nucleus	18.26	12.52
CDX86532	Canola	nucleus	18.49	11.49
CDY20057	Canola	nucleus	16.67	11.32
CDY72432	Canola	cytosol	12.33	10.69
CDX78390	Canola	nucleus	5.71	10.46
CDY68605	Canola	cytosol	12.79	10.2
CDX70356	Canola	nucleus, plastid	5.71	10.12
CDY43984	Canola	endoplasmic reticulum	9.82	9.84
CDX84396	Canola	nucleus	11.19	7.99
CDY13699	Canola	nucleus	7.08	6.78
CDY48139	Canola	nucleus	13.24	6.56
CDX83673	Canola	nucleus	7.08	6.22
CDY16729	Canola	nucleus	15.53	5.95

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	InterPro:Bromodomain_CS
EnsemblPlants:CDX84278	ProteinID:CDX84278	ProteinID:CDX84278.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00141363001
InterPro:GTE1/GTE6	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	InterPro:NET_dom
InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	ScanProsite:PS00633	PFscan:PS50014
PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF163	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0004EC0B12
SEG:seg	:	:	:	:	:

Description

BnaC04g10400D

Coordinates

chrLK031836:+:1333751..1335938

Molecular Weight (calculated)

49209.4 Da

IEP (calculated)

5.375

GRAVY (calculated)

-0.673

Length

438 amino acids

Sequence
(BLAST)

001: MGRTKKPRFE EPFLFQTLNR EKSEEGLADL LCFVLPSCVS WSVEKLASQY HASPMSVNVK EEPVLAPNCD VVENSELEVL NGDEESKLED YGTCVDVITE
101: RVNQLEQNVV EVEQFYSTKD GAGQTNTSKS NSGGKKVAMS QPSKCSSAGK EKTRGKHVSS PELMRQFATI IRQIAQQKWA WPFLEPVDVE GLGLDDYHKV
201: IEKPMDLGTI RTKMEGSEYS NVREIYADVR LVFKNAMRYN EEKHDVYVMA ESLLEKFEEK WLTIMPKLVE EEKKQAEEEA QDRASKQLAV EAAQAEKARD
301: LSNELYEIDQ ELEKLREIVV QKCRKLSTQE KKGLSAALGR LSPEDLSKAL KMVSEGNPHF PAGAPEVELD IDLQSDVTLW RLKVFVQEAL KAANKSSGGG
401: TNAQNNNNGG EMNKTAAKRR REITEAIKAN KVKKAKKA

Best Arabidopsis Sequence Match ( AT2G34900.1 )
(BLAST)

001: MSVHVKEEPV LVPNCDVENT ELAVFNGNGE SELENFGTCV DEITDRVNQL EQKVVEVEHF YSTKDGAAQT NTSKSNSGGK KIAISQPNNS KGNSAGKEKS
101: KGKHVSSPDL MRQFATMFRQ IAQHKWAWPF LEPVDVKGLG LHDYYKVIEK PMDLGTIKKK MESSEYSNVR EIYADVRLVF KNAMRYNEEK EDVYVMAESL
201: LEKFEEKWLL IMPKLVEEEK KQVDEEAEKH ANKQLTMEAA QAEMARDLSN ELYEIDLQLE KLRESVVQRC RKLSTQEKKG LSAALGRLSP EDLSKALKMV
301: SESNPSFPAG APEVELDIDV QTDVTLWRLK VFVQEALKAA NKSSGGTNAQ NNNNTGTGEI NKNNAKRRRE ISDAINKASI KRAKKA

Arabidopsis Description

GTE1Transcription factor GTE1 [Source:UniProtKB/Swiss-Prot;Acc:Q84XV2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.