CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025948.1-P	Field mustard	mitochondrion	99.76	99.76
CDY66497	Canola	nucleus	36.96	98.71
CDY26219	Canola	nucleus	40.82	90.86
CDY19175	Canola	nucleus, plastid	79.23	85.42
CDX83890	Canola	nucleus, plastid	67.63	76.5
CDX96751	Canola	nucleus, plastid	67.63	76.5
AT1G17790.1	Thale cress	nucleus, plastid	75.6	64.27
CDY21732	Canola	cytosol	39.13	63.78
CDX82101	Canola	nucleus	28.02	63.39
CDY48040	Canola	nucleus, plastid	57.49	60.71
CDX81848	Canola	cytosol, nucleus, plastid	38.16	57.45
CDX82103	Canola	plastid	40.58	53.67
CDY15568	Canola	nucleus	35.02	45.74
Os01t0214300-01	Rice	cytosol, nucleus	14.98	37.35
GSMUA_Achr10P...	Banana	nucleus, plastid	39.86	36.91
Zm00001d008922_P001	Maize	plastid	41.79	35.31
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	43.72	35.21
TraesCS3D01G146600.1	Wheat	nucleus, plastid	41.55	33.99
GSMUA_Achr11P...	Banana	nucleus	34.54	33.81
TraesCS3B01G164100.1	Wheat	nucleus, plastid	41.55	33.73
TraesCS3A01G140500.1	Wheat	nucleus, plastid	41.55	33.73
CDY08771	Canola	nucleus	28.5	33.33
EES02258	Sorghum	plastid	35.27	32.74
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	24.4	32.48
VIT_19s0014g01650.t01	Wine grape	nucleus	43.72	30.32
GSMUA_Achr1P11660_001	Banana	nucleus	37.44	30.21
CDY65656	Canola	cytosol	14.25	28.5
CDY06203	Canola	nucleus	42.03	27.02
CDY09981	Canola	nucleus	41.06	26.6
CDY65645	Canola	nucleus, plastid	32.61	26.52
TraesCS6D01G177700.1	Wheat	cytosol, plastid	40.1	26.14
HORVU6Hr1G045030.1	Barley	nucleus	39.86	26.07
HORVU6Hr1G045070.4	Barley	nucleus	39.86	25.94
CDX70356	Canola	nucleus, plastid	15.22	25.51
Os02t0250300-01	Rice	nucleus	40.34	25.46
CDX78390	Canola	nucleus	14.49	25.1
Zm00001d016131_P006	Maize	nucleus	40.34	24.89
PGSC0003DMT400039787	Potato	nucleus	41.55	24.43
Solyc12g014170.1.1	Tomato	nucleus	41.06	24.25
OQU84709	Sorghum	nucleus	41.55	24.16
CDX86532	Canola	nucleus	40.58	23.83
PGSC0003DMT400032373	Potato	nucleus	40.82	22.81
Solyc07g062660.2.1	Tomato	nucleus	39.13	21.54
Zm00001d053427_P007	Maize	nucleus	33.57	20.35
CDX70357	Canola	plastid	18.36	19.34
CDX90608	Canola	cytosol	16.43	19.1
CDY29075	Canola	cytoskeleton, cytosol, nucleus	16.67	18.96
CDY72432	Canola	cytosol	22.46	18.42
CDY31648	Canola	nucleus	18.84	18.35
CDX84278	Canola	nucleus	18.84	17.81
CDY68605	Canola	cytosol	22.71	17.12
Zm00001d039369_P004	Maize	plastid	38.65	17.08
CDY20057	Canola	nucleus	23.91	15.35
CDX84396	Canola	nucleus	18.6	12.56
CDY43984	Canola	endoplasmic reticulum	12.8	12.13
CDY13699	Canola	nucleus	10.63	9.63
CDY48139	Canola	nucleus	19.57	9.16
CDY16729	Canola	nucleus	24.64	8.93
CDX83673	Canola	nucleus	10.39	8.63

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	UniProt:A0A078GIC6	InterPro:Bromodomain	InterPro:Bromodomain-like_sf
EnsemblPlants:CDY26215	ProteinID:CDY26215	ProteinID:CDY26215.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00034881001	InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336
InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014
PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0004EED2F5
SEG:seg	:	:	:	:	:

Description

BnaA06g12020DBnaA06g12020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIC6]

Coordinates

chrLK032186:+:315792..317571

Molecular Weight (calculated)

45555.6 Da

IEP (calculated)

4.881

GRAVY (calculated)

-0.630

Length

414 amino acids

Sequence
(BLAST)

001: MLKVSLSSIS KLEVRSLKRR LTSELDEVRS LIARFDPQGG NFTTGKGGNK KVKTGNGVKK GDKGTVQIFK KCLNLLTKLM KHKDGWVFNV PVDAKGFGLH
101: DYHTIVKEPM DLGTVKAKLG EGLYESPLDF AEDVRLTFNN AILYNPVGHE VHSMAKFLLS MFEEKWAPIE LQYHSLHREM KPVRDVVLPR PAPVVEPLPA
201: PTPSPSPPLP TLPPAVLEDR TLEIAESMTT PLEPETVTTT ALEKPGGDEE APVDIRDLTM DEKRRLSEEL QDLPYDKLET VVQIVKKSNP ELSQQDDEIE
301: LDIDSLDIQT LWELYSFVTG YKENLSNKKE EDQGFGSERD AESAHNIIQE PATGTERSRV TESGKAIRMS SSPVRQENKA GGSSSSNSSS SDSGSSSSDS
401: DSDSSSGRGS DTGN

Best Arabidopsis Sequence Match ( AT1G17790.1 )
(BLAST)

001: MSSEHISGGG ASKTKKHKWS SSQNRPKPMG VSRQERSVPL VSPSNSFASE DDHHMLKISL SSISKLEVRN LKRKLKSELD EVRSLIKRFD PEANPGGSMA
101: KSGVVGRSKK VKTGNGGGKK SGHGADKGTV QIFKNCNSLL TKLMKHKSAW VFNVPVDAKG LGLHDYHNIV KEPMDLGTVK TKLGKSLYKS PLDFAEDVRL
201: TFNNAILYNP IGHDVYRFAE LLLNMFEDKW VSIEMQYDNL HRKFKPTRDI EFPAPAPSIA PIVEPLPAIV PSPSPSSPPP PPPPPVAAPV LENRTWEREE
301: SMTIPVEPEA VITAPEKAEE EEAPVNNRDL TLEEKRRLSE ELQDLPYDKL ETVVQIIKKS NPELSQKDDE IELDIDSLDI NTLWELYRFV TGYKESLSKK
401: NEAHGFGSER DAESVHNSIQ EPTTLVSGTT TSRVTESGKA IRTSSPARQE NNASGSSSSN SSSSDSGSCS SDTDSDSSSG RGSDNGN

Arabidopsis Description

GTE5Transcription factor GTE5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.