Factsheet for PGSC0003DMT400039787

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g014170.1.1	Tomato	nucleus	89.2	89.59
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	37.5	84.89
PGSC0003DMT400061998	Potato	cytosol	11.79	70.94
PGSC0003DMT400032373	Potato	nucleus	58.52	55.6
VIT_19s0014g01650.t01	Wine grape	nucleus	43.61	51.42
GSMUA_Achr10P...	Banana	nucleus, plastid	31.25	49.22
PGSC0003DMT400027387	Potato	nucleus	38.92	47.57
GSMUA_Achr11P...	Banana	nucleus	27.7	46.1
CDY66497	Canola	nucleus	9.94	45.16
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	32.81	44.94
Zm00001d008922_P001	Maize	plastid	30.54	43.88
CDX96751	Canola	nucleus, plastid	22.44	43.17
CDX83890	Canola	nucleus, plastid	22.44	43.17
CDX82101	Canola	nucleus	11.22	43.17
CDY19175	Canola	nucleus, plastid	23.01	42.19
Bra025948.1-P	Field mustard	mitochondrion	24.57	41.79
EES02258	Sorghum	plastid	26.42	41.7
TraesCS3D01G146600.1	Wheat	nucleus, plastid	29.97	41.7
CDY26215	Canola	mitochondrion	24.43	41.55
CDY26219	Canola	nucleus	10.94	41.4
TraesCS3A01G140500.1	Wheat	nucleus, plastid	29.97	41.37
CDY48040	Canola	nucleus, plastid	23.01	41.33
Bra008074.1-P	Field mustard	nucleus, plastid	23.01	41.33
TraesCS3B01G164100.1	Wheat	nucleus, plastid	29.83	41.18
GSMUA_Achr1P11660_001	Banana	nucleus	29.4	40.35
AT1G73150.1	Thale cress	plastid	25.71	39.26
Os01t0214300-01	Rice	cytosol, nucleus	9.23	39.16
Os02t0250300-01	Rice	nucleus	36.36	39.02
Bra016586.1-P	Field mustard	nucleus, plastid	24.29	38.86
HORVU6Hr1G045030.1	Barley	nucleus	34.94	38.86
HORVU6Hr1G045070.4	Barley	nucleus	35.09	38.84
Zm00001d016131_P006	Maize	nucleus	36.93	38.75
TraesCS6D01G177700.1	Wheat	cytosol, plastid	34.94	38.74
Bra031004.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	19.03	37.75
CDX82103	Canola	plastid	16.62	37.38
OQU84709	Sorghum	nucleus	37.64	37.22
AT1G17790.1	Thale cress	nucleus, plastid	25.57	36.96
Zm00001d053427_P007	Maize	nucleus	33.38	34.41
CDY21732	Canola	cytosol	12.07	33.46
PGSC0003DMT400008041	Potato	nucleus	23.58	27.57
CDX81848	Canola	cytosol, nucleus, plastid	10.51	26.91
PGSC0003DMT400078795	Potato	nucleus	19.32	22.97
PGSC0003DMT400044321	Potato	nucleus	12.07	22.55
Zm00001d039369_P004	Maize	plastid	28.12	21.13
PGSC0003DMT400039290	Potato	nucleus	21.02	18.83
PGSC0003DMT400018643	Potato	nucleus	13.49	15.68
PGSC0003DMT400052108	Potato	nucleus	16.05	15.5

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:102578148	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf
InterPro:Bromodomain_CS	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GTE_bromo
InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M1B8S3	InterPro:NET_dom
InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	EnsemblPlantsGene:PGSC0003DMG400015378	PGSC:PGSC0003DMG400015378	EnsemblPlants:PGSC0003DMT400039787
PRINTS:PR00503	ScanProsite:PS00633	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147
SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI000296AE0C	RefSeq:XP_006358951.1	RefSeq:XP_015169684.1	SEG:seg

Description

Bromodomain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015378]

Coordinates

chr12:+:286264..290431

Molecular Weight (calculated)

78230.3 Da

IEP (calculated)

8.242

GRAVY (calculated)

-0.844

Length

704 amino acids

Sequence
(BLAST)

001: MASHADDLKS RERLRWGSPT KVYTRKRRRI QKKDDPIPIS AAPDVNKGSS KDANGYVVQA GELESAEESE RLQYRQEEEE PQLKDSLPCD LELEDGRDRD
101: QVELINGGQG QDDTLGSQGD LDGREVANVG GSPIVEANNG GDVRGEEAAM ASYTDGLTRE HAELDSTVKP VISRVRDRIR INIGGATSRA EIRGIRRDLA
201: GELDQIRSLV TELEAKELQL TTHDTNTNGG FNNVGRITAI PNGAVNSSQP RHIDNGVMNS RALVRVNSEM GLVGHPGSRP FQRPRVAVVE NNNVVAEFVE
301: KEKRTPKANQ YYTNSEFLLG KDRLPPESNK KFKPNGAGRK HNGELEKGYP FGVGFGFDKH RNQVFKRCTT LLQRLMKHKH GWVFNEPVNV EGLGLHDYHA
401: IIKHPMDLGT IKARLSQNQY KSPREFAEDV RLVFRNAMTY NPKGHDVHVM SEQLLKIFEE RWAVIEGEFN PDWRYQMYHD AGLPTPTSRK VPQPSPFARA
501: SVTSHAAPPA SQARTLDRSE SMTGPADFRF KPSRVAHVGR VPVPKKPKAN DPDKRDMTYE EKQRLSTHLQ SLPLEKLDAV VQIIKKRNST FYQHDDVIEV
601: DIDSVDAESL WELERFVTNY KKNLSKQKRK TELAQQARGT TRTAPVMNSA PMVAGALNSN TEAGRQMDNA SSSSSSSSSS SDSGSSSSDS DSDSSSGSGS
701: EAAR

Best Arabidopsis Sequence Match ( AT1G73150.2 )
(BLAST)

001: MASGPIAGGG VSKTKHKWSD SGNKSQKRSK PTVANSNSLG LEDNHQMMKI SLSSISKLEV RNLKRKLQAE LEEVRSLIKR LEPQGNNFAP VPNKKLKTAN
101: GGKKGGVHGA AADKGTVQIL KSCNNLLTKL MKHKSGWIFN TPVDVVTLGL HDYHNIIKEP MDLGTVKTRL SKSLYKSPLE FAEDVRLTFN NAMLYNPVGH
201: DVYHMAEILL NLFEEKWVPL ETQYELLIRK QQPVRDIDFH APVSTNTHNV EALPLPAPTP SLSPPPPPKV VENRTLERAE SMTNPVKPAV LPVVPEKLVE
301: EASANRDLTF DEKRQLSEDL QDLPYDKLEA VVQIIKKRTP ELSQQDDEIE LDIDSLDLET LWELFRFVTE YKESLSKKKE EQGLDSERDA ESFHNSVHES
401: NTLVTGLESS KVTELGEILI LKIVSSSSIL VV

Arabidopsis Description

GTE3Transcription factor GTE3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.