Factsheet for HORVU6Hr1G045030.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G045070.4	Barley	nucleus	99.84	99.37
TraesCS6D01G177700.1	Wheat	cytosol, plastid	95.26	94.96
Os02t0250300-01	Rice	nucleus	74.25	71.65
Zm00001d016131_P006	Maize	nucleus	71.41	67.36
OQU84709	Sorghum	nucleus	73.14	65.03
Zm00001d053427_P007	Maize	nucleus	66.82	61.93
CDY15568	Canola	nucleus	26.86	53.63
GSMUA_Achr11P...	Banana	nucleus	33.49	50.12
CDY66497	Canola	nucleus	11.37	46.45
CDX83890	Canola	nucleus, plastid	24.64	42.62
CDY26219	Canola	nucleus	12.48	42.47
VIT_19s0014g01650.t01	Wine grape	nucleus	39.97	42.38
PGSC0003DMT400027387	Potato	nucleus	38.39	42.19
CDX96751	Canola	nucleus, plastid	24.01	41.53
Solyc10g008070.2.1	Tomato	nucleus	23.7	41.44
CDY19175	Canola	nucleus, plastid	25.12	41.41
KRH22304	Soybean	nucleus	41.71	41.25
KRH27020	Soybean	nucleus	41.86	41.02
VIT_12s0028g02510.t01	Wine grape	nucleus	41.55	40.21
CDY26215	Canola	mitochondrion	26.07	39.86
Bra025948.1-P	Field mustard	mitochondrion	25.91	39.61
Bra031004.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	21.8	38.87
CDY48040	Canola	nucleus, plastid	23.7	38.27
Bra008074.1-P	Field mustard	nucleus, plastid	23.7	38.27
CDX82101	Canola	nucleus	10.9	37.7
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	18.48	37.62
CDY06203	Canola	nucleus	38.23	37.58
CDX82103	Canola	plastid	18.48	37.38
CDY21732	Canola	cytosol	14.85	37.01
Bra016586.1-P	Field mustard	nucleus, plastid	25.59	36.82
AT1G73150.1	Thale cress	plastid	26.7	36.66
CDY09981	Canola	nucleus	36.81	36.46
Bra032431.1-P	Field mustard	nucleus	37.28	35.92
Solyc12g014170.1.1	Tomato	nucleus	39.34	35.52
AT1G17790.1	Thale cress	nucleus, plastid	27.17	35.32
PGSC0003DMT400032373	Potato	nucleus	40.92	34.95
PGSC0003DMT400039787	Potato	nucleus	38.86	34.94
CDX86532	Canola	nucleus	37.6	33.76
Bra015485.1-P	Field mustard	nucleus	39.18	33.11
Solyc07g062660.2.1	Tomato	nucleus	38.86	32.71
Bra030643.1-P	Field mustard	nucleus	37.91	32.48
AT1G06230.2	Thale cress	nucleus	37.44	30.94
KRH25703	Soybean	nucleus	42.18	30.55
CDX81848	Canola	cytosol, nucleus, plastid	12.16	28.0
CDY72432	Canola	cytosol	21.8	27.33
KRH55813	Soybean	nucleus	42.34	27.21
CDY68605	Canola	cytosol	23.22	26.78
HORVU4Hr1G055510.6	Barley	cytosol, nucleus, plastid	9.48	26.32
HORVU5Hr1G097840.6	Barley	cytosol	13.74	24.86
HORVU7Hr1G018300.6	Barley	cytosol	13.43	24.15
HORVU3Hr1G015760.1	Barley	nucleus	18.8	21.56
HORVU6Hr1G054560.16	Barley	nucleus	19.43	17.2
HORVU3Hr1G022660.1	Barley	nucleus	18.48	16.43
HORVU7Hr1G074620.7	Barley	cytosol, mitochondrion, nucleus	20.22	16.43
HORVU7Hr1G118300.1	Barley	cytosol	13.9	12.36

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GTE_bromo	EnsemblPlantsGene:HORVU6Hr1G045030	EnsemblPlants:HORVU6Hr1G045030.1
InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M0Z6Z9	InterPro:NET_dom
InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525
PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI000294E332	SEG:seg

Description

No Description!

Coordinates

chrchr6H:+:261289972..261300553

Molecular Weight (calculated)

70030.5 Da

IEP (calculated)

10.029

GRAVY (calculated)

-0.809

Length

633 amino acids

Sequence
(BLAST)

001: MSRWAPEIKV YSRRNPRKNP KPPPEDPTPN PNPPPEPSPD PNPHPEPRPI PNSDPLEQTL ASFRRSIRRS ESEDAVPPLS DPAAPTSPSP LSPTSSLHGA
101: PAAASGDFSS GLARDGAVVP NGHADIDVRA AADDKARKRR VRSELRRQLA SELDQVRVLS KRLKAAGEAL AVEASQPVPR PPPLLTAGYV HPQFSGSDAV
201: TPVPAPVTAS VPPVRSFLQR RPLIVPEVHI ESLDKEKRTP KANQLYQNSE FLLAKDRIPP SDSHGRKKTK HHKKKHRSST GAGYNAEQRL YSHAFKKSSS
301: LLCRLMKHKF GWVFNKPVDP VALGLHDYFA IIKHPMDLGT IKGQLTRGHY RDPKEFANDV RLTFHNAMTY NPKGQDVHFM AEQLLGIFEA QWPEIEAEVD
401: YLASCPPLPK KFPPPPIDLR LLERSDSLKP HMALDSKSRP ISHTPISVRT PSLKKPKAKD LDKRDMTIDE KRKLSNNLQN LPPEKLDIVV QIIKNKNLSV
501: RQHEDEIEVE IDSMDAETLW ELDRFVANFK KNLSKQKRKA ERAMLARQDV ELRALHAAQQ TSQQPNVGEK SPKLNLMVSE QLATSVPDQN NNNGPSASRS
601: SSSSSSSSDS DSSSSDSDSD SSSTDGSNAA NSS

Best Arabidopsis Sequence Match ( AT1G06230.2 )
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Arabidopsis Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.