CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27020	Soybean	nucleus	93.44	92.57
CDY15568	Canola	nucleus	30.94	62.46
Solyc10g008070.2.1	Tomato	nucleus	34.06	60.22
PGSC0003DMT400027387	Potato	nucleus	52.66	58.51
VIT_12s0028g02510.t01	Wine grape	nucleus	58.44	57.19
GSMUA_Achr10P...	Banana	nucleus, plastid	39.69	56.82
GSMUA_Achr11P...	Banana	nucleus	37.03	56.03
KRH25703	Soybean	nucleus	71.72	52.52
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	41.88	52.14
CDY06203	Canola	nucleus	51.88	51.55
Os01t0214300-01	Rice	cytosol, nucleus	13.12	50.6
CDY09981	Canola	nucleus	50.31	50.39
Bra032431.1-P	Field mustard	nucleus	51.56	50.23
Zm00001d008922_P001	Maize	plastid	37.66	49.18
TraesCS3D01G146600.1	Wheat	nucleus, plastid	37.19	47.04
TraesCS3A01G140500.1	Wheat	nucleus, plastid	37.34	46.86
KRH55813	Soybean	nucleus	72.03	46.8
TraesCS3B01G164100.1	Wheat	nucleus, plastid	37.19	46.67
EES02258	Sorghum	plastid	31.88	45.74
CDX86532	Canola	nucleus	50.31	45.67
GSMUA_Achr1P11660_001	Banana	nucleus	36.41	45.42
Bra030643.1-P	Field mustard	nucleus	51.25	44.38
Bra015485.1-P	Field mustard	nucleus	51.72	44.19
Os02t0250300-01	Rice	nucleus	45.0	43.9
AT1G06230.2	Thale cress	nucleus	52.03	43.47
Zm00001d016131_P006	Maize	nucleus	45.0	42.92
OQU84709	Sorghum	nucleus	47.03	42.28
HORVU6Hr1G045030.1	Barley	nucleus	41.25	41.71
HORVU6Hr1G045070.4	Barley	nucleus	41.25	41.51
TraesCS6D01G177700.1	Wheat	cytosol, plastid	41.09	41.42
CDY72432	Canola	cytosol	30.78	39.01
CDY68605	Canola	cytosol	32.66	38.07
KRH10646	Soybean	nucleus	31.09	37.62
Zm00001d053427_P007	Maize	nucleus	39.53	37.04
KRH21702	Soybean	nucleus	30.62	36.91
KRH10648	Soybean	nucleus	30.62	36.57
KRH45305	Soybean	nucleus	15.0	26.16
KRH12139	Soybean	nucleus	13.28	24.36
KRH04734	Soybean	nucleus	14.38	24.27
KRH37141	Soybean	cytosol, nucleus	10.31	24.18
Zm00001d039369_P004	Maize	plastid	34.84	23.8
KRH63729	Soybean	nucleus	27.81	22.73
KRH54219	Soybean	nucleus	27.97	22.72
KRH57199	Soybean	nucleus	25.47	22.06
KRH07021	Soybean	nucleus	23.12	19.89
KRG94435	Soybean	nucleus	22.5	19.41
KRH07022	Soybean	nucleus	22.5	18.32
KRH21136	Soybean	nucleus	14.84	16.78
KRH11112	Soybean	nucleus	14.53	16.46

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:100795530	MapMan:15.5.54	EMBL:ACUP02008404	InterPro:Bromodomain
InterPro:Bromodomain-like_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G292200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:K7M2K1
EnsemblPlants:KRH22304	ProteinID:KRH22304	ProteinID:KRH22304.1	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439
PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147
SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI000233BD70	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:-:39205743..39211521

Molecular Weight (calculated)

70231.2 Da

IEP (calculated)

9.516

GRAVY (calculated)

-0.849

Length

640 amino acids

Sequence
(BLAST)

001: MASGPIVGDD GAKEKQRYTE SKVYTRKAFK GPKNKGNAFS TVNAVPPPTA AATTNGGDNG SATATAVDYN KDNSTVNNGD VRAKDNSNNA SVLPVPVPVP
101: EDGNSARPQV NSRLDVISDD SSSLNRPRDE PLSVPGVRER SPGPENCVRI SLASRSKQEK RELRRRLQGE LIRVRSLVNG IEEKLGVLGG YGNSDRMVDR
201: GIGNGIGAKR AHSEVASAVV TLREPTRPLH QLSVSVLENS QGVGEIVEKE KRTPKANQFY RNSEFLLAKD KFPPAESNKK SKLNGKKHGT GEMGHGMGSK
301: LLKSCSSLLE KLMKHKHGWV FDTPVDVEGL GLHDYFSIIT HPMDLGTVKS RLNKNWYRSP KEFAEDVRLT FHNAMTYNPK GQDVHIMAEQ LSNIFEERWA
401: IIESNYNREM TYGLDYGAPS PVSRKAPPFR PPPIDMRRIL DRSESMTQPP KIMGITPSSR TPAPKKPKAK DPHKRDMTYE EKQKLSTHLQ SLPSEKLDAI
501: VQIIKKRNSA LSQHDDEIEV DIDSVDTETL WELDRFVTNY KKSLSKNKRK AELAIQAREQ AEQNAQQKSQ APVEVEIPTE TQADERNVPP SLPEQGQVPV
601: DNGSKTSSSS SSSSDSGSSS SDSDSDSSSA SGSDAGSPKT

Best Arabidopsis Sequence Match ( AT1G06230.2 )
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Arabidopsis Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.