CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22304	Soybean	nucleus	92.57	93.44
CDY15568	Canola	nucleus	31.27	63.72
Solyc10g008070.2.1	Tomato	nucleus	33.28	59.39
PGSC0003DMT400027387	Potato	nucleus	52.01	58.33
VIT_12s0028g02510.t01	Wine grape	nucleus	58.2	57.49
GSMUA_Achr10P...	Banana	nucleus, plastid	39.63	57.27
GSMUA_Achr11P...	Banana	nucleus	37.31	56.97
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	42.26	53.11
KRH25703	Soybean	nucleus	71.05	52.52
CDY06203	Canola	nucleus	51.86	52.02
Os01t0214300-01	Rice	cytosol, nucleus	13.16	51.2
CDY09981	Canola	nucleus	50.31	50.86
Bra032431.1-P	Field mustard	nucleus	51.39	50.53
Zm00001d008922_P001	Maize	plastid	37.93	50.0
TraesCS3D01G146600.1	Wheat	nucleus, plastid	37.62	48.02
TraesCS3A01G140500.1	Wheat	nucleus, plastid	37.77	47.84
TraesCS3B01G164100.1	Wheat	nucleus, plastid	37.62	47.65
EES02258	Sorghum	plastid	32.51	47.09
KRH55813	Soybean	nucleus	71.21	46.7
CDX86532	Canola	nucleus	50.46	46.24
GSMUA_Achr1P11660_001	Banana	nucleus	36.53	46.0
Bra030643.1-P	Field mustard	nucleus	51.55	45.06
Bra015485.1-P	Field mustard	nucleus	51.86	44.73
Os02t0250300-01	Rice	nucleus	44.89	44.21
AT1G06230.2	Thale cress	nucleus	52.32	44.13
Zm00001d016131_P006	Maize	nucleus	44.12	42.47
OQU84709	Sorghum	nucleus	46.44	42.13
HORVU6Hr1G045030.1	Barley	nucleus	41.02	41.86
TraesCS6D01G177700.1	Wheat	cytosol, plastid	41.02	41.73
HORVU6Hr1G045070.4	Barley	nucleus	41.02	41.67
CDY72432	Canola	cytosol	30.8	39.41
CDY68605	Canola	cytosol	32.97	38.8
KRH10646	Soybean	nucleus	31.11	38.0
Zm00001d053427_P007	Maize	nucleus	39.47	37.34
KRH10648	Soybean	nucleus	30.8	37.13
KRH21702	Soybean	nucleus	30.5	37.1
KRH45305	Soybean	nucleus	14.86	26.16
KRH12139	Soybean	nucleus	13.47	24.93
Zm00001d039369_P004	Maize	plastid	35.6	24.55
KRH37141	Soybean	cytosol, nucleus	10.37	24.54
KRH04734	Soybean	nucleus	14.24	24.27
KRH63729	Soybean	nucleus	27.86	22.99
KRH54219	Soybean	nucleus	27.86	22.84
KRH57199	Soybean	nucleus	25.08	21.92
KRH07021	Soybean	nucleus	22.91	19.89
KRG94435	Soybean	nucleus	22.45	19.54
KRH07022	Soybean	nucleus	22.29	18.32
KRH21136	Soybean	nucleus	14.71	16.78
KRH11112	Soybean	nucleus	14.4	16.46

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:100781720	MapMan:15.5.54	EMBL:ACUP02007762	InterPro:Bromodomain
InterPro:Bromodomain-like_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G209100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:GTE_bromo	UniProt:I1LUL1	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336
EnsemblPlants:KRH27020	ProteinID:KRH27020	ProteinID:KRH27020.1	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439
PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147
SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI000295F561	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:+:36850310..36855341

Molecular Weight (calculated)

70972.2 Da

IEP (calculated)

9.287

GRAVY (calculated)

-0.841

Length

646 amino acids

Sequence
(BLAST)

001: MASGPIVGDD GAKEKQRYTE SKVYTRKAFK GPKNKGNAVI TVNAVPPPPP PPPPPAAVAT TNGGDDGSAT VIAVDYNNKD NSTVDNGDVR AKDNSNNASV
101: QPVPEDGNSA RPQVNSMLDT VSDDSSSLNR PQDEPFSVPG VGERSPGPEN CVRISLASRS KQEKRELRRR LQGELNRVRS LVNRIEEKLG VLGGYGNSDM
201: MVDRGIGNGV GAKRAHSEVA SAVVTPRERE PTRPLHQLSV SVLENSQGVT EIVEKEKRTP TANQFYRNSE FLLGKDKFPP AESNKKSKLN GKKHVEGEMG
301: HGMGSKLLKS CSALLEKLMK HKHGWVFNAP VDVEGLGLHD YFSIITHPMD LGTVKSRLNK NWYKSPKEFA EDVRLTFHNA MTYNPKGQDV HIMAEQLLNI
401: FEERWAIIES NYYREIRYGL DYGAPSPVSR KAPPFRPPPI DMRRILDRSE SMTQPPKIMG ITPSSRTPAP KKPKAKDPHK RDMTYEEKQK LSTHLQSLPS
501: EKLDAIVQII KKRNSALSQH DDEIEVDIDS VDTETLWELD RFVTNYKKSL SKNKRKAELA ILARERAEQN AQQKSQAPVA VEIPKETQAD ERNVPPSLPE
601: QGQIPVDNGS KTSSSSSSSS DSGSSSSDSD SDSSSASGSD AGSPKT

Best Arabidopsis Sequence Match ( AT1G06230.2 )
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Arabidopsis Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.