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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • plastid 3
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH10646 Soybean nucleus 84.89 86.01
KRH21702 Soybean nucleus 84.51 85.31
VIT_03s0097g00570.t01 Wine grape nucleus 64.18 62.32
CDY08771 Canola nucleus 34.51 52.26
PGSC0003DMT400008041 Potato nucleus 56.9 50.66
Solyc01g106280.2.1 Tomato nucleus 56.53 50.33
CDX78390 Canola nucleus 21.64 48.54
CDX70356 Canola nucleus, plastid 22.2 48.18
CDY65645 Canola nucleus, plastid 44.96 47.35
Bra024402.1-P Field mustard nucleus, plastid 44.96 44.22
Zm00001d046528_P001 Maize cytosol 12.31 44.0
OQU82367 Sorghum nucleus 24.44 43.38
AT5G10550.1 Thale cress nucleus 47.01 43.37
GSMUA_Achr3P00480_001 Banana nucleus 42.16 43.3
AT5G65630.1 Thale cress nucleus 46.83 42.54
CDY65656 Canola cytosol 16.42 42.51
Bra006068.1-P Field mustard nucleus 43.1 42.08
GSMUA_Achr1P15650_001 Banana nucleus 38.43 41.87
Os04t0622800-00 Rice cytosol 24.25 41.8
Os04t0623100-01 Rice cytosol, mitochondrion, nucleus, plastid 34.14 40.13
Zm00001d002267_P001 Maize plastid 33.21 39.47
Bra005311.1-P Field mustard cytosol, plastid 16.98 39.06
TraesCS2A01G466700.3 Wheat cytosol, mitochondrion, nucleus, plastid 33.96 38.97
TraesCS2D01G466700.1 Wheat cytosol, mitochondrion, nucleus, plastid 34.14 38.94
TraesCS2B01G489500.1 Wheat plastid 33.4 38.66
Os08t0192800-01 Rice nucleus 33.4 37.21
Zm00001d026333_P001 Maize cytosol 32.09 36.52
KXG24660 Sorghum plastid 33.02 35.98
Zm00001d049400_P001 Maize plastid 32.09 35.54
Zm00001d024251_P001 Maize cytosol 30.6 33.68
KRH27020 Soybean nucleus 37.13 30.8
KRH22304 Soybean nucleus 36.57 30.62
CDX70357 Canola plastid 20.9 28.5
KRH04734 Soybean nucleus 15.86 22.43
KRH45305 Soybean nucleus 15.3 22.34
KRH63729 Soybean nucleus 31.72 21.71
KRH25703 Soybean nucleus 33.96 20.82
KRH54219 Soybean nucleus 30.41 20.69
KRH37141 Soybean cytosol, nucleus 10.45 20.51
KRH57199 Soybean nucleus 27.8 20.16
KRH12139 Soybean nucleus 12.87 19.77
KRH07021 Soybean nucleus 26.31 18.95
KRH55813 Soybean nucleus 34.33 18.68
KRG94435 Soybean nucleus 25.56 18.46
KRH07022 Soybean nucleus 26.31 17.94
KRH21136 Soybean nucleus 15.67 14.84
KRH11112 Soybean nucleus 15.3 14.51
Protein Annotations
Gene3D:1.20.1270.220Gene3D:1.20.920.10EntrezGene:100776603MapMan:15.5.54EMBL:ACUP02009151InterPro:Bromodomain
InterPro:Bromodomain-like_sfncoils:CoilEnsemblPlantsGene:GLYMA_15G060300GO:GO:0003674GO:GO:0005488GO:GO:0005515
UniProt:I1ME31InterPro:IPR001487InterPro:IPR027353InterPro:IPR036427InterPro:IPR038336EnsemblPlants:KRH10648
ProteinID:KRH10648ProteinID:KRH10648.1InterPro:NET_domInterPro:NET_sfPFAM:PF00439PFAM:PF17035
PRINTS:PR00503PFscan:PS50014PFscan:PS51525PANTHER:PTHR22880PANTHER:PTHR22880:SF147SMART:SM00297
SUPFAM:SSF47370UniParc:UPI000233B71DSEG:seg:::
Description
hypothetical protein
Coordinates
chr15:-:4663294..4666859
Molecular Weight (calculated)
59262.4 Da
IEP (calculated)
8.559
GRAVY (calculated)
-0.924
Length
536 amino acids
Sequence
(BLAST)
001: MASAVLANRN EPNWPKHRVG GAGFMGKVPF SNPNPKSKSN PKLANSKRTL SASDDASSIN RRSNDFVTFS QYVSFNIASY TNKEINDLKD RLTSELERTQ
101: RIRNRIESGD LQPGQSFNGH PKKPSNKKVS GNKRPLPSNS ATDLKRSHSE VGSLMKGCSQ VLQKLMKHKH GWIFNAPVDV VGLQLTDYYD VIKQPMDLGT
201: VKSNLSMNKY TTPSDFASDV RLTFNNALAY NPKGHDVYTV AELLLTRFEE LYRPLHEKFE GSVGHDRESE EELQASSWSH VEPERVKKKE NPTPPPPPPP
301: EKLQQEPPQP PASSSNPPLL QSPVRTPSPM RAPPVKPLKQ PKPKAKDPNK RDMSLEEKHK LGLGLQSLPP EKMEQVVQII RRRNGHLKQD GDEIELDIEA
401: VDTETLWELD RLVTNYKKMV SKIKRQALMG NIYNDNVQAN KGNEELPARE KVERAAVEAK KPKKVEAGDE DVDIGDEIPT SMFPPVEIEK DKDVAGGHAS
501: SSSCSSGSSS SDSSSSSDSD SGSSSGSDSE ADNGQS
Best Arabidopsis Sequence Match ( AT1G06230.1 )
(BLAST)
001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT
Arabidopsis Description
GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.