Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
21132161
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G65630.1 | KRH03376 | AT5G62920.1 | 18642946 |
AT5G65630.1 | KRH54462 | AT5G62920.1 | 18642946 |
AT5G65630.1 | KRH57009 | AT5G62920.1 | 18642946 |
AT5G65630.1 | KRH63457 | AT5G62920.1 | 18642946 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH10646 | Soybean | nucleus | 84.89 | 86.01 |
KRH21702 | Soybean | nucleus | 84.51 | 85.31 |
VIT_03s0097g00570.t01 | Wine grape | nucleus | 64.18 | 62.32 |
CDY08771 | Canola | nucleus | 34.51 | 52.26 |
PGSC0003DMT400008041 | Potato | nucleus | 56.9 | 50.66 |
Solyc01g106280.2.1 | Tomato | nucleus | 56.53 | 50.33 |
CDX78390 | Canola | nucleus | 21.64 | 48.54 |
CDX70356 | Canola | nucleus, plastid | 22.2 | 48.18 |
CDY65645 | Canola | nucleus, plastid | 44.96 | 47.35 |
Bra024402.1-P | Field mustard | nucleus, plastid | 44.96 | 44.22 |
Zm00001d046528_P001 | Maize | cytosol | 12.31 | 44.0 |
OQU82367 | Sorghum | nucleus | 24.44 | 43.38 |
AT5G10550.1 | Thale cress | nucleus | 47.01 | 43.37 |
GSMUA_Achr3P00480_001 | Banana | nucleus | 42.16 | 43.3 |
AT5G65630.1 | Thale cress | nucleus | 46.83 | 42.54 |
CDY65656 | Canola | cytosol | 16.42 | 42.51 |
Bra006068.1-P | Field mustard | nucleus | 43.1 | 42.08 |
GSMUA_Achr1P15650_001 | Banana | nucleus | 38.43 | 41.87 |
Os04t0622800-00 | Rice | cytosol | 24.25 | 41.8 |
Os04t0623100-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 34.14 | 40.13 |
Zm00001d002267_P001 | Maize | plastid | 33.21 | 39.47 |
Bra005311.1-P | Field mustard | cytosol, plastid | 16.98 | 39.06 |
TraesCS2A01G466700.3 | Wheat | cytosol, mitochondrion, nucleus, plastid | 33.96 | 38.97 |
TraesCS2D01G466700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 34.14 | 38.94 |
TraesCS2B01G489500.1 | Wheat | plastid | 33.4 | 38.66 |
Os08t0192800-01 | Rice | nucleus | 33.4 | 37.21 |
Zm00001d026333_P001 | Maize | cytosol | 32.09 | 36.52 |
KXG24660 | Sorghum | plastid | 33.02 | 35.98 |
Zm00001d049400_P001 | Maize | plastid | 32.09 | 35.54 |
Zm00001d024251_P001 | Maize | cytosol | 30.6 | 33.68 |
KRH27020 | Soybean | nucleus | 37.13 | 30.8 |
KRH22304 | Soybean | nucleus | 36.57 | 30.62 |
CDX70357 | Canola | plastid | 20.9 | 28.5 |
KRH04734 | Soybean | nucleus | 15.86 | 22.43 |
KRH45305 | Soybean | nucleus | 15.3 | 22.34 |
KRH63729 | Soybean | nucleus | 31.72 | 21.71 |
KRH25703 | Soybean | nucleus | 33.96 | 20.82 |
KRH54219 | Soybean | nucleus | 30.41 | 20.69 |
KRH37141 | Soybean | cytosol, nucleus | 10.45 | 20.51 |
KRH57199 | Soybean | nucleus | 27.8 | 20.16 |
KRH12139 | Soybean | nucleus | 12.87 | 19.77 |
KRH07021 | Soybean | nucleus | 26.31 | 18.95 |
KRH55813 | Soybean | nucleus | 34.33 | 18.68 |
KRG94435 | Soybean | nucleus | 25.56 | 18.46 |
KRH07022 | Soybean | nucleus | 26.31 | 17.94 |
KRH21136 | Soybean | nucleus | 15.67 | 14.84 |
KRH11112 | Soybean | nucleus | 15.3 | 14.51 |
Protein Annotations
Gene3D:1.20.1270.220 | Gene3D:1.20.920.10 | EntrezGene:100776603 | MapMan:15.5.54 | EMBL:ACUP02009151 | InterPro:Bromodomain |
InterPro:Bromodomain-like_sf | ncoils:Coil | EnsemblPlantsGene:GLYMA_15G060300 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
UniProt:I1ME31 | InterPro:IPR001487 | InterPro:IPR027353 | InterPro:IPR036427 | InterPro:IPR038336 | EnsemblPlants:KRH10648 |
ProteinID:KRH10648 | ProteinID:KRH10648.1 | InterPro:NET_dom | InterPro:NET_sf | PFAM:PF00439 | PFAM:PF17035 |
PRINTS:PR00503 | PFscan:PS50014 | PFscan:PS51525 | PANTHER:PTHR22880 | PANTHER:PTHR22880:SF147 | SMART:SM00297 |
SUPFAM:SSF47370 | UniParc:UPI000233B71D | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr15:-:4663294..4666859
Molecular Weight (calculated)
59262.4 Da
IEP (calculated)
8.559
GRAVY (calculated)
-0.924
Length
536 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAVLANRN EPNWPKHRVG GAGFMGKVPF SNPNPKSKSN PKLANSKRTL SASDDASSIN RRSNDFVTFS QYVSFNIASY TNKEINDLKD RLTSELERTQ
101: RIRNRIESGD LQPGQSFNGH PKKPSNKKVS GNKRPLPSNS ATDLKRSHSE VGSLMKGCSQ VLQKLMKHKH GWIFNAPVDV VGLQLTDYYD VIKQPMDLGT
201: VKSNLSMNKY TTPSDFASDV RLTFNNALAY NPKGHDVYTV AELLLTRFEE LYRPLHEKFE GSVGHDRESE EELQASSWSH VEPERVKKKE NPTPPPPPPP
301: EKLQQEPPQP PASSSNPPLL QSPVRTPSPM RAPPVKPLKQ PKPKAKDPNK RDMSLEEKHK LGLGLQSLPP EKMEQVVQII RRRNGHLKQD GDEIELDIEA
401: VDTETLWELD RLVTNYKKMV SKIKRQALMG NIYNDNVQAN KGNEELPARE KVERAAVEAK KPKKVEAGDE DVDIGDEIPT SMFPPVEIEK DKDVAGGHAS
501: SSSCSSGSSS SDSSSSSDSD SGSSSGSDSE ADNGQS
101: RIRNRIESGD LQPGQSFNGH PKKPSNKKVS GNKRPLPSNS ATDLKRSHSE VGSLMKGCSQ VLQKLMKHKH GWIFNAPVDV VGLQLTDYYD VIKQPMDLGT
201: VKSNLSMNKY TTPSDFASDV RLTFNNALAY NPKGHDVYTV AELLLTRFEE LYRPLHEKFE GSVGHDRESE EELQASSWSH VEPERVKKKE NPTPPPPPPP
301: EKLQQEPPQP PASSSNPPLL QSPVRTPSPM RAPPVKPLKQ PKPKAKDPNK RDMSLEEKHK LGLGLQSLPP EKMEQVVQII RRRNGHLKQD GDEIELDIEA
401: VDTETLWELD RLVTNYKKMV SKIKRQALMG NIYNDNVQAN KGNEELPARE KVERAAVEAK KPKKVEAGDE DVDIGDEIPT SMFPPVEIEK DKDVAGGHAS
501: SSSCSSGSSS SDSSSSSDSD SGSSSGSDSE ADNGQS
001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT
Arabidopsis Description
GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.