Factsheet for Os04t0623100-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0622800-00	Rice	cytosol	62.5	91.64
Zm00001d046528_P001	Maize	cytosol	23.68	72.0
OQU82367	Sorghum	nucleus	46.05	69.54
Zm00001d002267_P001	Maize	plastid	67.54	68.29
TraesCS2B01G489500.1	Wheat	plastid	69.08	68.03
TraesCS2A01G466700.3	Wheat	cytosol, mitochondrion, nucleus, plastid	69.08	67.45
TraesCS2D01G466700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	69.3	67.23
Zm00001d026333_P001	Maize	cytosol	65.35	63.27
Os08t0192800-01	Rice	nucleus	55.48	52.6
CDY08771	Canola	nucleus	28.29	36.44
GSMUA_Achr1P15650_001	Banana	nucleus	37.5	34.76
GSMUA_Achr3P00480_001	Banana	nucleus	39.25	34.29
KRH10648	Soybean	nucleus	40.13	34.14
KRH21702	Soybean	nucleus	39.69	34.09
KRH10646	Soybean	nucleus	39.25	33.84
CDX78390	Canola	nucleus	17.32	33.05
VIT_03s0097g00570.t01	Wine grape	nucleus	39.91	32.97
CDX70356	Canola	nucleus, plastid	17.76	32.79
CDY65645	Canola	nucleus, plastid	35.31	31.63
CDY65656	Canola	cytosol	14.25	31.4
Os01t0648700-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	15.79	30.25
Bra024402.1-P	Field mustard	nucleus, plastid	35.75	29.91
Bra005311.1-P	Field mustard	cytosol, plastid	14.91	29.18
PGSC0003DMT400008041	Potato	nucleus	38.16	28.9
Solyc01g106280.2.1	Tomato	nucleus	37.72	28.57
AT5G65630.1	Thale cress	nucleus	36.4	28.14
Bra006068.1-P	Field mustard	nucleus	33.55	27.87
Os01t0214300-01	Rice	cytosol, nucleus	10.09	27.71
AT5G10550.1	Thale cress	nucleus	34.87	27.37
PGSC0003DMT400078795	Potato	nucleus	33.11	25.51
Solyc02g091660.2.1	Tomato	nucleus	28.95	24.67
Os06t0138000-01	Rice	cytosol, nucleus	6.36	23.39
Os02t0250300-01	Rice	nucleus	31.14	21.65
CDX70357	Canola	plastid	18.2	21.12
Os02t0601800-03	Rice	nucleus	26.32	16.81
Os07t0507700-01	Rice	nucleus	13.82	10.48
Os08t0127300-01	Rice	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	EntrezGene:4337044	MEROPS:A01.A34	EMBL:AK067276
ProteinID:BAF15835.1	ProteinID:BAS91075.1	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ProteinID:CAD41835.2	ProteinID:CAE03496.2
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353
InterPro:IPR036427	InterPro:IPR038336	InterPro:NET_dom	InterPro:NET_sf	EnsemblPlantsGene:Os04g0623100	EnsemblPlants:Os04t0623100-01
PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880
PANTHER:PTHR22880:SF162	UniProt:Q7X637	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI00001B0EC5	RefSeq:XP_015637260.1
SEG:seg	:	:	:	:	:

Description

Bromodomain containing protein. (Os04t0623100-01)

Coordinates

chr4:-:31663355..31665410

Molecular Weight (calculated)

50293.5 Da

IEP (calculated)

6.974

GRAVY (calculated)

-0.630

Length

456 amino acids

Sequence
(BLAST)

001: MASALLAGRG GVNHHHHHHQ WGETRAPLAP VAPNSDPNHP LQQRANGSAT RPPPSSYVAL RPGAMAHREA RALRDRLAGE LGQVRALIAR IDTWQQGQVK
101: RHGSPRRDLP TPPAKLRAAM RKRCEQILAK LRKDKRSIWF NAPVEVDRLG LHDYHAVIKC PMDLGTVRAN LAAGRYPSHD DFAADVRLTF SNALRYNPAG
201: HEVHTFAGDL LASFEKMYKA SMSWFEQELK LLEPPMPVPP PELPPATAPV QVKPRAANVK MRKPKAREPN KRDMTLEEKN LLRVGLESLP EEKMHNVLQI
301: VRKRNGNPEL VGGEIELDID EMDVETQWEL DRFVNNFKKA LNKSRRAAIV NGENADVIDA SVANDSDMLV NGSTATMVDN GDVTMAIESK DPDKITTQAE
401: QLDEYVDIGD EMPTATYQSV EIEKDTEAAS SGSSSSSDSG SSKDSVSESG NAHSLV

Best Arabidopsis Sequence Match ( AT1G06230.2 )
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Arabidopsis Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.