CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046528_P001	Maize	cytosol	45.7	92.0
Zm00001d002267_P001	Maize	plastid	91.72	61.42
Os04t0622800-00	Rice	cytosol	59.93	58.2
Zm00001d026333_P001	Maize	cytosol	87.42	56.05
TraesCS2A01G466700.3	Wheat	cytosol, mitochondrion, nucleus, plastid	73.51	47.54
TraesCS2B01G489500.1	Wheat	plastid	72.85	47.52
TraesCS2D01G466700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	72.52	46.6
Os04t0623100-01	Rice	cytosol, mitochondrion, nucleus, plastid	69.54	46.05
KXG24660	Sorghum	plastid	55.63	34.15
CDX78390	Canola	nucleus	26.16	33.05
CDX70356	Canola	nucleus, plastid	26.82	32.79
CDY08771	Canola	nucleus	36.76	31.36
CDY65656	Canola	cytosol	20.2	29.47
Bra005311.1-P	Field mustard	cytosol, plastid	20.86	27.04
KRH21702	Soybean	nucleus	44.04	25.05
KRH10646	Soybean	nucleus	43.71	24.95
KRH10648	Soybean	nucleus	43.38	24.44
VIT_03s0097g00570.t01	Wine grape	nucleus	43.71	23.91
GSMUA_Achr1P15650_001	Banana	nucleus	38.74	23.78
GSMUA_Achr3P00480_001	Banana	nucleus	40.4	23.37
CDY65645	Canola	nucleus, plastid	37.09	22.0
Bra006068.1-P	Field mustard	nucleus	39.4	21.68
Bra024402.1-P	Field mustard	nucleus, plastid	38.74	21.47
EES02258	Sorghum	plastid	30.13	20.4
AT5G10550.1	Thale cress	nucleus	38.74	20.14
PGSC0003DMT400008041	Potato	nucleus	40.07	20.1
Solyc01g106280.2.1	Tomato	nucleus	39.74	19.93
AT5G65630.1	Thale cress	nucleus	38.41	19.66
Solyc02g091660.2.1	Tomato	nucleus	33.77	19.07
PGSC0003DMT400078795	Potato	nucleus	35.1	17.91
KXG33001	Sorghum	plastid	13.24	17.62
OQU84709	Sorghum	nucleus	33.11	14.04
EER87804	Sorghum	nucleus	15.56	13.58
EES07108	Sorghum	nucleus	26.49	11.25
KXG24325	Sorghum	nucleus	24.83	10.59
CDX70357	Canola	plastid	12.91	9.92
EER97261	Sorghum	nucleus	14.9	9.24
EES09391	Sorghum	cytosol, mitochondrion, nucleus	12.91	8.97
EES09393	Sorghum	nucleus	16.56	8.26

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:35.1	UniProt:A0A1Z5RF90	InterPro:Bromodomain	InterPro:Bromodomain-like_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427
InterPro:IPR038336	InterPro:NET_dom	InterPro:NET_sf	EnsemblPlants:OQU82367	ProteinID:OQU82367	ProteinID:OQU82367.1
PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880
PANTHER:PTHR22880:SF162	EnsemblPlantsGene:SORBI_3006G220000	SUPFAM:SSF47370	UniParc:UPI000B8BA7CE	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:56717572..56719115

Molecular Weight (calculated)

32660.0 Da

IEP (calculated)

4.381

GRAVY (calculated)

-0.616

Length

302 amino acids

Sequence
(BLAST)

001: MDLGTVKEGL AAGRYASHDD FAADVRLTFT NALRYNPVGH EVHTFAGALL AYFERMYKEA LANFEEECRS LEPPPRPVAV ELPPPPAAEP VEAKVKPRAG
101: NVRMRKPKAR EPNKREMSLE EKNMLRIGLE SLPEEKMHNV LQIVRKRNNN PEMLGDEIEL DIDEMDVETQ WELDRFVTNF NKALKKSQRA AMMNGGAADV
201: TSAAVAEDDT APVGDVPALV DNDDAESEKP VKSTAMAEQV DEYVDIGDEM PTATYQSMEI EKDAEGVTGS GGSGSGSSSS SGSESRSSGD SASGAGNAHS
301: LA

Best Arabidopsis Sequence Match ( AT1G06230.2 )
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Arabidopsis Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.