Factsheet for Bra006068.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78390	Canola	nucleus	43.17	99.16
CDX70356	Canola	nucleus, plastid	44.26	98.38
AT5G10550.1	Thale cress	nucleus	76.32	72.12
Bra024402.1-P	Field mustard	nucleus, plastid	63.93	64.4
Bra005311.1-P	Field mustard	cytosol, plastid	26.59	62.66
CDX70357	Canola	plastid	31.69	44.27
KRH10648	Soybean	nucleus	42.08	43.1
KRH10646	Soybean	nucleus	40.98	42.53
KRH21702	Soybean	nucleus	40.98	42.37
VIT_03s0097g00570.t01	Wine grape	nucleus	42.44	42.21
OQU82367	Sorghum	nucleus	21.68	39.4
GSMUA_Achr3P00480_001	Banana	nucleus	36.98	38.89
GSMUA_Achr1P15650_001	Banana	nucleus	34.06	38.01
Solyc02g091660.2.1	Tomato	nucleus	36.79	37.76
Os04t0622800-00	Rice	cytosol	20.95	36.98
PGSC0003DMT400078795	Potato	nucleus	39.53	36.66
Zm00001d002267_P001	Maize	plastid	28.78	35.03
Bra008074.1-P	Field mustard	nucleus, plastid	24.95	34.95
Os04t0623100-01	Rice	cytosol, mitochondrion, nucleus, plastid	27.87	33.55
Zm00001d046528_P001	Maize	cytosol	9.11	33.33
Bra025948.1-P	Field mustard	mitochondrion	25.14	33.33
Os08t0192800-01	Rice	nucleus	28.78	32.85
TraesCS2B01G489500.1	Wheat	plastid	26.78	31.75
Zm00001d026333_P001	Maize	cytosol	27.14	31.63
TraesCS2A01G466700.3	Wheat	cytosol, mitochondrion, nucleus, plastid	26.78	31.48
Zm00001d049400_P001	Maize	plastid	27.69	31.41
Bra031004.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	20.22	31.27
KXG24660	Sorghum	plastid	27.87	31.1
TraesCS2D01G466700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	26.59	31.06
Bra016586.1-P	Field mustard	nucleus, plastid	24.77	30.91
Zm00001d024251_P001	Maize	cytosol	27.14	30.6
Bra038624.1-P	Field mustard	nucleus	12.75	28.93
Bra032431.1-P	Field mustard	nucleus	28.78	24.05
Bra030643.1-P	Field mustard	nucleus	29.14	21.65
Bra015485.1-P	Field mustard	nucleus	28.78	21.09
Bra005383.1-P	Field mustard	nucleus	13.66	19.48
Bra025262.1-P	Field mustard	nucleus	19.13	19.41
Bra012810.1-P	Field mustard	cytosol	12.2	18.82
Bra039088.1-P	Field mustard	nucleus	20.77	17.51
Bra022044.1-P	Field mustard	nucleus	15.66	16.38
Bra034451.1-P	Field mustard	cytosol	13.3	13.83
Bra035848.1-P	Field mustard	nucleus	20.04	9.24

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	EnsemblPlantsGene:Bra006068	EnsemblPlants:Bra006068.1	EnsemblPlants:Bra006068.1-P
InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M4CPD0	InterPro:NET_dom
InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525
PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI000253F898	SEG:seg

Description

AT5G10550 (E=2e-115) GTE2 | GTE2 (Global transcription factor group E 2); DNA binding

Coordinates

chrA03:-:1849923..1852327

Molecular Weight (calculated)

60962.5 Da

IEP (calculated)

8.184

GRAVY (calculated)

-0.733

Length

549 amino acids

Sequence
(BLAST)

001: MCLISFDAIM MEMGMISLKQ MDRVFIKPAA DLAKRRQCDA VFMRKHTNHP DDFTNPNPNS SSQFRDGGDY VSFDLDSYSS NQLRELKKRL NLELEQVRFL
101: RERIESGAFT TPAHEIGVAN KTTKKKKKTS HSHGRLDLES ERALRSTMST RGKLLEKLMK HKWSWVFKTP VDVLGLGLQD YHLIVKKPMD LGTVKTNLEK
201: GFYRSPVDFA SDVRLTFTNA LAYNPKGQDV YKMAEKLLSQ FDVWFSPTLK KFEAQQQGSS SRPPVVSELN QRLSENARKG PEQISIAKKL DSLKPLPTLP
301: PPVMELPRVP SPPPSPVQPP PPQPVSKVES PPPPPQPVNQ VEASVEVGEA PKGRKGKLPK PKAKDPNKRE MTMEEKAKLG VNLQELPPEK LGQLIQILKK
401: RTTNLPQDGD EIELDIEELD NETLWELDRF VTNYKKMASK IKRQGFIQNL STPTRNMPPV MEMGSAEKRV RKGGDGGEED VDIGEDIPIE DYPSVEIERD
501: GTAATAGSSS SGSSSSSGGS SSSDSESGSS SGSDSDADSV QSPFVEAKE

Best Arabidopsis Sequence Match ( AT5G10550.1 )
(BLAST)

001: MAPAVLANLN EPLFLGQCGA VFMRKYTNQP LSGDINNPLF NPNPNPNSIS AYGNNSSKHF DDSSAYGDYV SFDLDGYTSN QLRELKKRLN SELEEVRFLR
101: ERIESGTFVS GSVYTTQARS FAGETNDVGV KKTKTKKKKI GHGQKRSNPF ATDEPSLKRH VALDLMSEKV LKSMMTTCGQ ILVKLMKHKW SWVFLNPVDV
201: VGLGLHDYHR IVDKPMDLGT VKMNLEKGLY RSPIDFASDV RLTFTNAMSY NPKGQDVYLM AEKLLSQFDV WFNPTLKRFE AQEVKVMGSS SRPGPEDNQR
301: VWNQNNVAEN ARKGPEQISI AKKLDSVKPL LPTLPPPPVI EITRDPSPPP SPVQPPPPPS PPPQPVNQVE ASLEVRETNK GRKGKLPKPK AKDPNKREMT
401: MDEKGKLGVN LQELPPEKLG QLIQILRKRT RDLPQDGDEI ELDIEALDNE TLWELDRFVT NYRKMASKIK RQGFIQNVST PPRNMPPVTE MGSAEKRGRK
501: GGEAGEEDVD IGEDIPVEDY PSVEIERDGT AAAASGGSSS SGSFSSSGSS SSSDSESGSS SGSDSDADSV QSPFVEAKEA P

Arabidopsis Description

GTE2Transcription factor GTE2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.