Factsheet for Bra025948.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26215	Canola	mitochondrion	99.76	99.76
Bra016586.1-P	Field mustard	nucleus, plastid	79.95	75.23
Bra031004.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	57.73	67.32
AT1G17790.1	Thale cress	nucleus, plastid	75.36	64.07
Bra008074.1-P	Field mustard	nucleus, plastid	57.25	60.46
Os01t0214300-01	Rice	cytosol, nucleus	14.98	37.35
GSMUA_Achr10P...	Banana	nucleus, plastid	40.1	37.14
Zm00001d008922_P001	Maize	plastid	42.03	35.51
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	43.96	35.41
TraesCS3D01G146600.1	Wheat	nucleus, plastid	41.79	34.19
GSMUA_Achr11P...	Banana	nucleus	34.78	34.04
TraesCS3B01G164100.1	Wheat	nucleus, plastid	41.79	33.92
TraesCS3A01G140500.1	Wheat	nucleus, plastid	41.79	33.92
EES02258	Sorghum	plastid	35.51	32.96
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	24.4	32.48
VIT_19s0014g01650.t01	Wine grape	nucleus	43.96	30.49
GSMUA_Achr1P11660_001	Banana	nucleus	37.68	30.41
Bra038624.1-P	Field mustard	nucleus	16.43	28.1
Bra032431.1-P	Field mustard	nucleus	42.03	26.48
TraesCS6D01G177700.1	Wheat	cytosol, plastid	39.86	25.98
HORVU6Hr1G045030.1	Barley	nucleus	39.61	25.91
HORVU6Hr1G045070.4	Barley	nucleus	39.61	25.79
Bra024402.1-P	Field mustard	nucleus, plastid	33.82	25.69
Os02t0250300-01	Rice	nucleus	40.1	25.3
Bra006068.1-P	Field mustard	nucleus	33.33	25.14
Bra005311.1-P	Field mustard	cytosol, plastid	14.01	24.89
Zm00001d016131_P006	Maize	nucleus	40.1	24.74
PGSC0003DMT400039787	Potato	nucleus	41.79	24.57
Solyc12g014170.1.1	Tomato	nucleus	41.3	24.39
OQU84709	Sorghum	nucleus	41.3	24.02
Bra015485.1-P	Field mustard	nucleus	42.27	23.36
Bra030643.1-P	Field mustard	nucleus	41.55	23.27
PGSC0003DMT400032373	Potato	nucleus	41.06	22.94
Solyc07g062660.2.1	Tomato	nucleus	39.37	21.68
Bra005383.1-P	Field mustard	nucleus	18.84	20.26
Zm00001d053427_P007	Maize	nucleus	33.33	20.2
Bra012810.1-P	Field mustard	cytosol	16.67	19.38
Zm00001d039369_P004	Maize	plastid	38.89	17.18
Bra025262.1-P	Field mustard	nucleus	21.98	16.82
Bra039088.1-P	Field mustard	nucleus	23.91	15.21
Bra022044.1-P	Field mustard	nucleus	18.6	14.67
Bra034451.1-P	Field mustard	cytosol	16.91	13.26
Bra035848.1-P	Field mustard	nucleus	24.64	8.56

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	EnsemblPlantsGene:Bra025948	EnsemblPlants:Bra025948.1	EnsemblPlants:Bra025948.1-P
InterPro:Bromodomain	InterPro:Bromodomain-like_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GTE_bromo
InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M4EAY9	InterPro:NET_dom
InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525
PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI000253F36E	SEG:seg

Description

AT1G17790 (E=2e-094) | DNA-binding bromodomain-containing protein

Coordinates

chrA06:-:6846092..6847597

Molecular Weight (calculated)

45527.5 Da

IEP (calculated)

4.825

GRAVY (calculated)

-0.628

Length

414 amino acids

Sequence
(BLAST)

001: MLKVSLSSIS KLEVRSLKRR LTSELDEVRS LIARFDPQGG NFTTGKGGNK KVKTGNGVKK GDKGTVQIFK KCLNLLTKLM KHKDGWVFNV PVDAKGFGLH
101: DYHTIVKEPM DLGTVKAKLG EGLYESPLDF AEDVRLTFNN AILYNPVGHE VHSMAKFLLS MFEEKWAPIE LQYHSLHREM KPVRDVVLPR PAPVVEPLPA
201: PTPSPSPPLP TLPPAVLEDR TLEIAESMTT PLEPETVTTT ALEKPGGDEE APVDIRDLTM DEKQRLSEEL QDLPYDKLET VVQIVKKSNP ELSQQDDEIE
301: LDIDSLDIQT LWELYSFVTG YKENLSNKKE EDQGFGSERD AESAHNIIQE PATGTERSRV TESGKAIRMS SSPVRQENKA GGSSSSNSSS SDSGSSSSDS
401: DSDSSSGRGS DTGN

Best Arabidopsis Sequence Match ( AT1G17790.1 )
(BLAST)

001: MSSEHISGGG ASKTKKHKWS SSQNRPKPMG VSRQERSVPL VSPSNSFASE DDHHMLKISL SSISKLEVRN LKRKLKSELD EVRSLIKRFD PEANPGGSMA
101: KSGVVGRSKK VKTGNGGGKK SGHGADKGTV QIFKNCNSLL TKLMKHKSAW VFNVPVDAKG LGLHDYHNIV KEPMDLGTVK TKLGKSLYKS PLDFAEDVRL
201: TFNNAILYNP IGHDVYRFAE LLLNMFEDKW VSIEMQYDNL HRKFKPTRDI EFPAPAPSIA PIVEPLPAIV PSPSPSSPPP PPPPPVAAPV LENRTWEREE
301: SMTIPVEPEA VITAPEKAEE EEAPVNNRDL TLEEKRRLSE ELQDLPYDKL ETVVQIIKKS NPELSQKDDE IELDIDSLDI NTLWELYRFV TGYKESLSKK
401: NEAHGFGSER DAESVHNSIQ EPTTLVSGTT TSRVTESGKA IRTSSPARQE NNASGSSSSN SSSSDSGSCS SDTDSDSSSG RGSDNGN

Arabidopsis Description

GTE5Transcription factor GTE5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.