Factsheet for Solyc12g014170.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039787	Potato	nucleus	89.59	89.2
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	36.23	81.67
Solyc07g062660.2.1	Tomato	nucleus	56.35	52.53
VIT_19s0014g01650.t01	Wine grape	nucleus	43.08	50.59
GSMUA_Achr10P...	Banana	nucleus, plastid	31.53	49.44
Solyc10g008070.2.1	Tomato	nucleus	24.54	47.51
GSMUA_Achr11P...	Banana	nucleus	27.96	46.34
CDY66497	Canola	nucleus	10.13	45.81
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	32.67	44.55
Zm00001d008922_P001	Maize	plastid	30.67	43.88
CDX82101	Canola	nucleus	11.27	43.17
CDX83890	Canola	nucleus, plastid	22.4	42.9
CDX96751	Canola	nucleus, plastid	22.4	42.9
EES02258	Sorghum	plastid	26.82	42.15
Bra008074.1-P	Field mustard	nucleus, plastid	23.54	42.09
CDY48040	Canola	nucleus, plastid	23.54	42.09
TraesCS3D01G146600.1	Wheat	nucleus, plastid	30.24	41.9
TraesCS3A01G140500.1	Wheat	nucleus, plastid	30.24	41.57
CDY19175	Canola	nucleus, plastid	22.68	41.41
CDY26219	Canola	nucleus	10.98	41.4
TraesCS3B01G164100.1	Wheat	nucleus, plastid	30.1	41.37
Bra025948.1-P	Field mustard	mitochondrion	24.39	41.3
CDY26215	Canola	mitochondrion	24.25	41.06
AT1G73150.1	Thale cress	plastid	26.11	39.7
Os02t0250300-01	Rice	nucleus	36.95	39.48
HORVU6Hr1G045030.1	Barley	nucleus	35.52	39.34
HORVU6Hr1G045070.4	Barley	nucleus	35.66	39.31
TraesCS6D01G177700.1	Wheat	cytosol, plastid	35.52	39.21
GSMUA_Achr1P11660_001	Banana	nucleus	28.67	39.18
Os01t0214300-01	Rice	cytosol, nucleus	9.27	39.16
Zm00001d016131_P006	Maize	nucleus	37.09	38.75
Bra016586.1-P	Field mustard	nucleus, plastid	24.25	38.64
CDX82103	Canola	plastid	16.98	38.02
Bra031004.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	19.12	37.75
AT1G17790.1	Thale cress	nucleus, plastid	26.11	37.58
OQU84709	Sorghum	nucleus	38.09	37.5
Zm00001d053427_P007	Maize	nucleus	34.09	34.99
CDY21732	Canola	cytosol	12.13	33.46
CDX81848	Canola	cytosol, nucleus, plastid	10.84	27.64
Solyc01g106280.2.1	Tomato	nucleus	23.68	27.57
Solyc09g015660.2.1	Tomato	cytosol	13.12	25.48
Solyc09g090370.2.1	Tomato	nucleus	12.13	24.57
Solyc02g091660.2.1	Tomato	nucleus	18.54	24.3
Zm00001d039369_P004	Maize	plastid	28.39	21.24
Solyc03g111090.2.1	Tomato	nucleus	21.54	19.33
Solyc02g071510.2.1	Tomato	nucleus	13.98	16.7
Solyc02g093880.2.1	Tomato	nucleus	16.55	16.0

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	InterPro:Bromodomain_CS
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GTE_bromo	InterPro:IPR001487
InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:K4DCV2	InterPro:NET_dom	InterPro:NET_sf
PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	ScanProsite:PS00633	PFscan:PS50014	PFscan:PS51525
PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370	EnsemblPlantsGene:Solyc12g014170.1	EnsemblPlants:Solyc12g014170.1.1
UniParc:UPI000276A653	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:5021721..5024196

Molecular Weight (calculated)

78386.5 Da

IEP (calculated)

9.153

GRAVY (calculated)

-0.879

Length

701 amino acids

Sequence
(BLAST)

001: MASYADDLKS RERLRWGSPI KVYTRKRRRI QKKDDSIPIS AAPDVSSNDA NGYVVQAGES ESAEKSERLQ DRQEVEEPQL KACDLELEDG RDRNQDQDLV
101: ELINGGQGQE DTLGSQGDVD GRDVGKFGGS PIVEANTSGD VRGKQAARET DADGLTRDHA ELDSTVKPVI SRFRDRIRIN IGGMTSRAEI KGIRRDLAGE
201: LDQVRSLVTE LEAKQIQLTA HDTNTNGGSN NVGRIPSVPS GAVNSYSQPR YIDNGVMNSR ALVRANSEMD LVGHPRSRPF QRPRVAVVEN NNVAAEFVEK
301: EKRTPKANQY YTNSEFLLAK DRLPPESNKK FKPNGAGRKH NGELEQGYPF GVGFGFDKHR NQVFKRCTTL LQRLMKHKHG WVFNEPVNVE RLGLHDYHAI
401: IKHPMDLGTI KARLSQNWYK SPREFAEDVR LVFHNAMTYN PKGHDVHLMS EQLLKIFEDR WAVIEAEFNP DWRYQMYHDA GLPTPASRKV PQPSPFARAS
501: VTSHPPASQA RALERSELMT EPADFRFKPS RVAHVGRVPV PKKPKANDPN KRDMTYEEKQ RLSTHLQSLP LEKLDAVVQI IKKRNSTFYQ NGDEIEVDID
601: SVDVESLWEL ERFVTNYKKN LSKQKRKTEL AQQARRTART APVMNSAPMV AGAPNSNTEA GRQMDNASRS SSSSSSSSDS GSSSSDSDSD SSSGSGSEGG
701: H

Best Arabidopsis Sequence Match ( AT1G06230.2 )
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Arabidopsis Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.