Factsheet for Solyc09g090370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044321	Potato	nucleus	95.66	87.8
Solyc09g015660.2.1	Tomato	cytosol	65.61	62.88
KRH45305	Soybean	nucleus	57.23	53.95
KRH37141	Soybean	cytosol, nucleus	41.04	52.01
GSMUA_Achr8P29340_001	Banana	nucleus	55.78	49.36
EER87804	Sorghum	nucleus	48.27	48.27
TraesCS1B01G385900.1	Wheat	cytosol	47.11	47.66
Os06t0138000-01	Rice	cytosol, nucleus	17.05	47.58
TraesCS4A01G377900.2	Wheat	cytosol	48.27	47.58
AT2G34900.1	Thale cress	nucleus	52.89	47.41
TraesCS7D01G074500.1	Wheat	cytosol	47.98	47.29
TraesCS7A01G080900.1	Wheat	nucleus	47.98	47.29
HORVU5Hr1G097840.6	Barley	cytosol	47.69	47.14
KRH12139	Soybean	nucleus	47.11	46.7
TraesCS1A01G367300.1	Wheat	cytosol	46.82	46.42
Bra005383.1-P	Field mustard	nucleus	51.16	45.97
HORVU7Hr1G018300.6	Barley	cytosol	46.53	45.74
TraesCS1D01G373000.1	Wheat	cytosol	47.4	45.68
Zm00001d036092_P004	Maize	endoplasmic reticulum, nucleus, plastid	47.69	45.21
CDY31648	Canola	nucleus	51.16	41.65
CDX84278	Canola	nucleus	50.87	40.18
GSMUA_Achr8P34430_001	Banana	nucleus	47.69	38.37
Bra034451.1-P	Field mustard	cytosol	45.38	29.73
Solyc02g091660.2.1	Tomato	nucleus	22.54	14.58
Solyc01g106280.2.1	Tomato	nucleus	21.1	12.13
Solyc12g014170.1.1	Tomato	nucleus	24.57	12.13
Solyc02g071510.2.1	Tomato	nucleus	20.52	12.1
Solyc07g062660.2.1	Tomato	nucleus	25.43	11.7
Solyc03g111090.2.1	Tomato	nucleus	22.25	9.86
Solyc02g093880.2.1	Tomato	nucleus	20.23	9.66
Solyc10g008070.2.1	Tomato	nucleus	9.25	8.84

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009791	GO:GO:0009987	GO:GO:0010030	GO:GO:0045893	InterPro:GTE1/GTE6
InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:K4CW63	InterPro:NET_dom
InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525
PANTHER:PTHR22880	PANTHER:PTHR22880:SF163	SMART:SM00297	SUPFAM:SSF47370	EnsemblPlantsGene:Solyc09g090370.2	EnsemblPlants:Solyc09g090370.2.1
UniParc:UPI000276AD75	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:+:69895222..69899854

Molecular Weight (calculated)

40132.9 Da

IEP (calculated)

9.211

GRAVY (calculated)

-0.923

Length

346 amino acids

Sequence
(BLAST)

001: MVGKVDQIEQ RLNEVEHFYS NTSKKQSNTP RGGSILKDKE KQMSSFRRRQ QDASRREAAG SRRMQELMRQ FGTILRQITQ HKWAEPFMEP VDVKGLGLHD
101: YFEVIEKPMD FSTIKNKMEA KDGSGYKHVR EICADVRLIF KNAMKYNEER DDVHVMAKTL LGKFEEKWLQ LLPKVDEEEK RRKEEEAEAQ QDMQLAQEAA
201: HAKMAKDLTI ELDEVDMQLE ELRDLVLQKC RKISTEDRKQ LGNALTKLSP DDLNKALLIV AQNDPTFQPT ATEVELDMNA QSESTLWKLK FFVQDVLHTQ
301: GKSPVSVKTN NINTSNLLNN NNNNKRRREF YDALAKSSQK KSKKPS

Best Arabidopsis Sequence Match ( AT2G34900.1 )
(BLAST)

001: MSVHVKEEPV LVPNCDVENT ELAVFNGNGE SELENFGTCV DEITDRVNQL EQKVVEVEHF YSTKDGAAQT NTSKSNSGGK KIAISQPNNS KGNSAGKEKS
101: KGKHVSSPDL MRQFATMFRQ IAQHKWAWPF LEPVDVKGLG LHDYYKVIEK PMDLGTIKKK MESSEYSNVR EIYADVRLVF KNAMRYNEEK EDVYVMAESL
201: LEKFEEKWLL IMPKLVEEEK KQVDEEAEKH ANKQLTMEAA QAEMARDLSN ELYEIDLQLE KLRESVVQRC RKLSTQEKKG LSAALGRLSP EDLSKALKMV
301: SESNPSFPAG APEVELDIDV QTDVTLWRLK VFVQEALKAA NKSSGGTNAQ NNNNTGTGEI NKNNAKRRRE ISDAINKASI KRAKKA

Arabidopsis Description

GTE1Transcription factor GTE1 [Source:UniProtKB/Swiss-Prot;Acc:Q84XV2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.