Factsheet for Solyc01g106280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008041	Potato	nucleus	96.84	96.84
VIT_03s0097g00570.t01	Wine grape	nucleus	54.82	59.78
KRH10646	Soybean	nucleus	51.99	59.17
KRH21702	Soybean	nucleus	50.0	56.69
KRH10648	Soybean	nucleus	50.33	56.53
GSMUA_Achr3P00480_001	Banana	nucleus	39.87	45.98
GSMUA_Achr1P15650_001	Banana	nucleus	36.54	44.72
Os04t0622800-00	Rice	cytosol	21.1	40.84
OQU82367	Sorghum	nucleus	19.93	39.74
Zm00001d046528_P001	Maize	cytosol	9.63	38.67
Zm00001d002267_P001	Maize	plastid	28.74	38.36
TraesCS2A01G466700.3	Wheat	cytosol, mitochondrion, nucleus, plastid	29.73	38.33
TraesCS2B01G489500.1	Wheat	plastid	29.07	37.8
Os04t0623100-01	Rice	cytosol, mitochondrion, nucleus, plastid	28.57	37.72
TraesCS2D01G466700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	29.4	37.66
Os08t0192800-01	Rice	nucleus	29.57	37.01
Zm00001d049400_P001	Maize	plastid	28.74	35.74
KXG24660	Sorghum	plastid	28.9	35.37
Zm00001d026333_P001	Maize	cytosol	27.57	35.24
Solyc02g091660.2.1	Tomato	nucleus	30.4	34.21
Zm00001d024251_P001	Maize	cytosol	26.91	33.26
Solyc10g008070.2.1	Tomato	nucleus	17.11	28.45
Solyc12g014170.1.1	Tomato	nucleus	27.57	23.68
Solyc09g015660.2.1	Tomato	cytosol	13.12	21.88
Solyc07g062660.2.1	Tomato	nucleus	26.91	21.54
Solyc09g090370.2.1	Tomato	nucleus	12.13	21.1
Solyc03g111090.2.1	Tomato	nucleus	25.91	19.97
Solyc02g093880.2.1	Tomato	nucleus	19.93	16.55
Solyc02g071510.2.1	Tomato	nucleus	15.78	16.18

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427
InterPro:IPR038336	UniProt:K4B2J6	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035
PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297
SUPFAM:SSF47370	EnsemblPlantsGene:Solyc01g106280.2	EnsemblPlants:Solyc01g106280.2.1	UniParc:UPI00027676E7	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:94224254..94227123

Molecular Weight (calculated)

65574.3 Da

IEP (calculated)

8.773

GRAVY (calculated)

-0.945

Length

602 amino acids

Sequence
(BLAST)

001: MASAVLASRN ESSWAQSGGA GGGFMGKTPY SHTQLNPNHN PNPKKKQKQF HHTSNGRHMD DSPAVTQTAS DDAYSFNQRP IESTTNVDGL NFGGYLTFNV
101: VSYNKAEVNE LRSRLMAEVE QIRNLKDRIE SGQLSTTNPR SQGKSKKQSG NKRPTPSGSS KDLKKLPNGV ENRNFGNPGG VDGVKAIGTE SMMKECRQIL
201: AKLMKHKNGW IFNIPVDAEA LGLHDYHQII KRPMDLGTVK SNLAKNFYPS PFEFAADVRL TFNNALLYNP KTDQVNGFAE QLLGRFEDMF RPLQDKMNKL
301: EGGRRDYHPV DELQGSSWNH IPTPERVKKP KPTPVPNISK KQERMQNHSS ASTPSLPVPP PNPPARQQSP LSTPSPVRAP AAKPQSAAKV PTMGKQPKPR
401: AKDPNKREMN MEEKHKLGVG LQSLPQEKMP QLVQIIRKRN EHLAQDGDEI ELDIEALDTE TLWELDRFVT NWKKMVSKTK RQALMNNLGP PSASAAASAA
501: TTSVAEADGP TTSEKNDSFK KAKKGDVGEE DVEIEDDEPA THFPPVEIEK DEGGGRDQEN GGGGGSSSSS SSSSSSSGSS SSSDSDSGSS SGSDSDADDA
601: HS

Best Arabidopsis Sequence Match ( AT5G65630.1 )
(BLAST)

001: MAPAVFATLN EPSYQEQCGA VFMRKFTNQS VTENTNNLPL FNPNPNPNFE RSNSSKQCDD SSEFGSYATF NLAGYTSSQL RELKKRFTSE LKQIRILRER
101: IESGTFETQQ GYTIPEVPAV RSAPLNNFTG EKNDLGPKKK KQKKNVSGLK RSNQFGPSDP ESEKLLAGML NTCSQILVKL MKHKWAWVFN TPVDVVGLGL
201: HDYHQVVKKP MDLGTVKLNL DKGFYVSPID FATDVRLTFD NAMTYNPKGQ DVYFMADKLL DHFDGMFNPA FKKFEAQQLK LTGSSSRPEP DFKPDFKQRQ
301: WNQNPPMVAN PRKGTEQISI AKKLDSVKPP QPTLPPQLVE PSRVQSPSPP PPPPVIQPEL PQPQPPPPQL EIEVEAPPDV SEVSKGRKGK LPKPKAKDPN
401: KRLMTMEEKS KLGMNLQDLP PEKLGQLLQI LRKRNGHLAQ DGDEIELDIE AVDNETLWEL DRFVTNYKKM ASKIKRQGFI RNVSTPPRNM ASVAEMGSAE
501: KRTRRGDAGE EDVDIGEDIP IEDYPSVEIE RDGTAVAAAA SSGSSSSGSS SSSGGSSSSS DSGSGGSSSG SDSDADSVQS PFVEAKEAQC

Arabidopsis Description

GTE7Transcription factor GTE7 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y214]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.