Factsheet for Zm00001d026333_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046528_P001	Maize	cytosol	31.0	97.33
OQU82367	Sorghum	nucleus	56.05	87.42
Zm00001d002267_P001	Maize	plastid	81.32	84.92
Os04t0622800-00	Rice	cytosol	44.8	67.85
Os04t0623100-01	Rice	cytosol, mitochondrion, nucleus, plastid	63.27	65.35
TraesCS2B01G489500.1	Wheat	plastid	63.69	64.79
TraesCS2A01G466700.3	Wheat	cytosol, mitochondrion, nucleus, plastid	64.12	64.67
TraesCS2D01G466700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	63.91	64.04
Zm00001d049400_P001	Maize	plastid	49.47	48.14
Zm00001d024251_P001	Maize	cytosol	48.41	46.82
CDY08771	Canola	nucleus	25.69	34.18
GSMUA_Achr1P15650_001	Banana	nucleus	35.24	33.74
GSMUA_Achr3P00480_001	Banana	nucleus	35.88	32.38
KRH10648	Soybean	nucleus	36.52	32.09
KRH21702	Soybean	nucleus	36.09	32.02
VIT_03s0097g00570.t01	Wine grape	nucleus	36.94	31.52
KRH10646	Soybean	nucleus	35.03	31.19
Zm00001d008922_P001	Maize	plastid	32.06	30.82
CDY65656	Canola	cytosol	13.16	29.95
CDY65645	Canola	nucleus, plastid	32.27	29.86
CDX78390	Canola	nucleus	14.86	29.29
CDX70356	Canola	nucleus, plastid	15.29	29.15
Bra024402.1-P	Field mustard	nucleus, plastid	32.7	28.26
PGSC0003DMT400008041	Potato	nucleus	35.24	27.57
Solyc01g106280.2.1	Tomato	nucleus	35.24	27.57
Bra005311.1-P	Field mustard	cytosol, plastid	13.59	27.47
Bra006068.1-P	Field mustard	nucleus	31.63	27.14
AT5G10550.1	Thale cress	nucleus	32.91	26.68
AT5G65630.1	Thale cress	nucleus	32.7	26.1
Solyc02g091660.2.1	Tomato	nucleus	28.45	25.05
PGSC0003DMT400078795	Potato	nucleus	31.42	25.0
CDX70357	Canola	plastid	18.05	21.63
Zm00001d016131_P006	Maize	nucleus	28.24	19.82
Zm00001d036092_P004	Maize	endoplasmic reticulum, nucleus, plastid	14.86	19.18
Zm00001d053427_P007	Maize	nucleus	26.11	18.01
Zm00001d017126_P001	Maize	nucleus	23.57	15.95
Zm00001d039369_P004	Maize	plastid	31.63	15.9
Zm00001d049638_P009	Maize	nucleus	22.08	13.38
Zm00001d035167_P001	Maize	nucleus	21.44	13.32
Zm00001d004790_P008	Maize	nucleus	14.23	11.59
Zm00001d053022_P001	Maize	nucleus	14.23	10.93
Zm00001d021185_P001	Maize	cytosol, nucleus, plastid	0.21	1.28

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:100284851	MapMan:15.5.54	UniProt:A0A1D6JEQ3	ProteinID:AQK46271.1
InterPro:Bromodomain	InterPro:Bromodomain-like_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001487
InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439
PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF162
SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0004DE9491	EnsemblPlantsGene:Zm00001d026333	EnsemblPlants:Zm00001d026333_P001	EnsemblPlants:Zm00001d026333_T001
SEG:seg	:	:	:	:	:

Description

Bromodomain containing protein

Coordinates

chr10:-:143647928..143649894

Molecular Weight (calculated)

51696.8 Da

IEP (calculated)

7.165

GRAVY (calculated)

-0.509

Length

471 amino acids

Sequence
(BLAST)

001: MASSLLAGRG GGHHHNWGET RAPLEPIPPN PSPSQPHPRA DGSKSKPRAA AGYVKFRPAS LGHREARALR DRLAVELGQV RALLSRIDTW QQQGPPPRAV
101: LRGAMRKRCG QILSRLRKDK RSVWFNAPVE VERLGLHDYH AVIKRPMDLG TVKEGLAAGR YASHDDFAAD VRLTFTNALR YNPVGHEVHT FAGALLAYFE
201: RMYKEALVCL EEERKRLEPP RPVAAELPPP PAVEPVEAKA KTRAGNVRMR KPKAREPNKR EMSLEEKNML RLGLVSLPEE KMHNVLQIVR KRNNNPEMLG
301: DEIELDIDEM DVETQWELDR FVTNFNKALK KSQRAAMLNG GVADVTSTAV AEDDTAPVGD VPTLVGNDDA ESEEPVKSTT VAEQVDEYVD IGDEMPAATY
401: QSMEIEKDAE GTTGSGGSGS GSSSSSGMIK LALCSPSIVP KFLQGADFLH LQVLSRGAQG TVPQELAMLI L

Best Arabidopsis Sequence Match ( AT1G06230.2 )
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Arabidopsis Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.