CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006068.1-P	Field mustard	nucleus	44.27	31.69
AT5G10550.1	Thale cress	nucleus	39.95	27.02
CDY65656	Canola	cytosol	13.74	26.09
CDY65645	Canola	nucleus, plastid	32.82	25.34
CDY08771	Canola	nucleus	22.14	24.58
CDX82103	Canola	plastid	18.83	23.64
GSMUA_Achr3P00480_001	Banana	nucleus	29.01	21.84
GSMUA_Achr1P15650_001	Banana	nucleus	26.72	21.34
CDX96751	Canola	nucleus, plastid	19.85	21.31
KRH10646	Soybean	nucleus	28.5	21.17
CDX83890	Canola	nucleus, plastid	19.59	21.04
KRH21702	Soybean	nucleus	28.24	20.9
KRH10648	Soybean	nucleus	28.5	20.9
VIT_03s0097g00570.t01	Wine grape	nucleus	29.26	20.83
CDY48040	Canola	nucleus, plastid	20.61	20.66
CDY19175	Canola	nucleus, plastid	19.34	19.79
Zm00001d002267_P001	Maize	plastid	22.39	19.51
Os04t0622800-00	Rice	cytosol	15.27	19.29
Solyc02g091660.2.1	Tomato	nucleus	25.95	19.07
CDY15568	Canola	nucleus	15.01	18.61
TraesCS2B01G489500.1	Wheat	plastid	21.63	18.36
CDY26215	Canola	mitochondrion	19.34	18.36
Os04t0623100-01	Rice	cytosol, mitochondrion, nucleus, plastid	21.12	18.2
Zm00001d026333_P001	Maize	cytosol	21.63	18.05
CDX82101	Canola	nucleus	8.4	18.03
TraesCS2A01G466700.3	Wheat	cytosol, mitochondrion, nucleus, plastid	21.37	17.99
PGSC0003DMT400078795	Potato	nucleus	26.97	17.91
TraesCS2D01G466700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	21.37	17.87
Os08t0192800-01	Rice	nucleus	20.87	17.05
Zm00001d024251_P001	Maize	cytosol	20.61	16.63
Zm00001d049400_P001	Maize	plastid	19.85	16.12
KXG24660	Sorghum	plastid	20.1	16.06
CDY72432	Canola	cytosol	19.85	15.45
CDY68605	Canola	cytosol	20.36	14.57
CDY21732	Canola	cytosol	8.4	12.99
OQU82367	Sorghum	nucleus	9.92	12.91
CDY31648	Canola	nucleus	13.74	12.71
CDX90608	Canola	cytosol	11.45	12.64
CDY09981	Canola	nucleus	20.1	12.36
CDX84278	Canola	nucleus	13.74	12.33
CDY06203	Canola	nucleus	19.85	12.11
CDY29075	Canola	cytoskeleton, cytosol, nucleus	10.94	11.81
CDX86532	Canola	nucleus	21.12	11.77
CDY20057	Canola	nucleus	18.07	11.01
CDY48139	Canola	nucleus	15.01	6.67
CDY43984	Canola	endoplasmic reticulum	6.87	6.18
CDX84396	Canola	nucleus	7.63	4.89
CDX81848	Canola	cytosol, nucleus, plastid	3.31	4.73
CDY16729	Canola	nucleus	11.7	4.03
CDY26219	Canola	nucleus	1.27	2.69
Zm00001d046528_P001	Maize	cytosol	0.76	2.0
CDY13699	Canola	nucleus	1.53	1.31
CDY66497	Canola	nucleus	0.51	1.29
CDX78390	Canola	nucleus	0.76	1.26
CDX70356	Canola	nucleus, plastid	0.76	1.21
CDX83673	Canola	nucleus	1.53	1.2

Protein Annotations

Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	EnsemblPlants:CDX70357	ProteinID:CDX70357
ProteinID:CDX70357.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00140136001
InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR036427	PFAM:PF00439	PRINTS:PR00503	PFscan:PS50014
PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0004EF3D88	SEG:seg

Description

BnaC03g04410D

Coordinates

chrLK031791:-:9617..11643

Molecular Weight (calculated)

44945.1 Da

IEP (calculated)

9.950

GRAVY (calculated)

-0.425

Length

393 amino acids

Sequence
(BLAST)

001: MVPTHRLCLG IDATLTYKKH PATRLFTGMT SFSPVFKYSC HRVSLFENNC FFKEGSDGPD LTKLRQYKYS DCNLFHSIIE PLSRSGDFSR GVFSSFLSLP
101: LPFRRASPSV TLILLHICNN VSISFDAIMM EMGMISLKQM DRVFIKPAAD LAKRRQCDAV FMRKHTNHPD DFTNPNPNSS NQFRDGGDYV SFDLDSYTSI
201: QLRELKKRLN LELEQVRFLR ERIESGAFTT PAHEIEIGVA KKTTTKKKKK TSHGRLDLES EKALRSTMST CGQILAKLMK HKWSWVFNTP VDVLGLGLHD
301: YHLIVKKPMD LGTVKTNLEK GFYRSPVDFA SDVRLTFTNA LAYNPKGQDV YKMAEKLLSQ FDVWFSPTLK KFEAQQQAQQ QGSSSQKDLN RFQ

Best Arabidopsis Sequence Match ( AT5G10550.1 )
(BLAST)

001: MAPAVLANLN EPLFLGQCGA VFMRKYTNQP LSGDINNPLF NPNPNPNSIS AYGNNSSKHF DDSSAYGDYV SFDLDGYTSN QLRELKKRLN SELEEVRFLR
101: ERIESGTFVS GSVYTTQARS FAGETNDVGV KKTKTKKKKI GHGQKRSNPF ATDEPSLKRH VALDLMSEKV LKSMMTTCGQ ILVKLMKHKW SWVFLNPVDV
201: VGLGLHDYHR IVDKPMDLGT VKMNLEKGLY RSPIDFASDV RLTFTNAMSY NPKGQDVYLM AEKLLSQFDV WFNPTLKRFE AQEVKVMGSS SRPGPEDNQR
301: VWNQNNVAEN ARKGPEQISI AKKLDSVKPL LPTLPPPPVI EITRDPSPPP SPVQPPPPPS PPPQPVNQVE ASLEVRETNK GRKGKLPKPK AKDPNKREMT
401: MDEKGKLGVN LQELPPEKLG QLIQILRKRT RDLPQDGDEI ELDIEALDNE TLWELDRFVT NYRKMASKIK RQGFIQNVST PPRNMPPVTE MGSAEKRGRK
501: GGEAGEEDVD IGEDIPVEDY PSVEIERDGT AAAASGGSSS SGSFSSSGSS SSSDSESGSS SGSDSDADSV QSPFVEAKEA P

Arabidopsis Description

GTE2Transcription factor GTE2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.