Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48040 | Canola | nucleus, plastid | 77.05 | 35.97 |
| CDY66497 | Canola | nucleus | 28.96 | 34.19 |
| CDX82103 | Canola | plastid | 57.92 | 33.87 |
| CDY26219 | Canola | nucleus | 30.05 | 29.57 |
| CDY21732 | Canola | cytosol | 39.89 | 28.74 |
| CDY26215 | Canola | mitochondrion | 63.39 | 28.02 |
| AT1G73150.1 | Thale cress | plastid | 69.4 | 27.55 |
| CDX83890 | Canola | nucleus, plastid | 52.46 | 26.23 |
| CDX96751 | Canola | nucleus, plastid | 51.37 | 25.68 |
| CDY19175 | Canola | nucleus, plastid | 51.91 | 24.74 |
| CDY15568 | Canola | nucleus | 39.34 | 22.71 |
| CDX81848 | Canola | cytosol, nucleus, plastid | 32.79 | 21.82 |
| GSMUA_Achr11P... | Banana | nucleus | 42.08 | 18.2 |
| CDY65656 | Canola | cytosol | 19.67 | 17.39 |
| EES02258 | Sorghum | plastid | 42.08 | 17.26 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 42.08 | 17.23 |
| Os01t0214300-01 | Rice | cytosol, nucleus | 15.3 | 16.87 |
| Zm00001d008922_P001 | Maize | plastid | 42.62 | 15.92 |
| CDY08771 | Canola | nucleus | 30.6 | 15.82 |
| TraesCS3D01G146600.1 | Wheat | nucleus, plastid | 43.17 | 15.61 |
| GSMUA_Achr7P09350_001 | Banana | nucleus, plastid | 43.72 | 15.56 |
| TraesCS3A01G140500.1 | Wheat | nucleus, plastid | 43.17 | 15.49 |
| PGSC0003DMT400061991 | Potato | cytoskeleton, cytosol, nucleus | 25.68 | 15.11 |
| TraesCS3B01G164100.1 | Wheat | nucleus, plastid | 42.08 | 15.1 |
| GSMUA_Achr1P11660_001 | Banana | nucleus | 41.53 | 14.81 |
| VIT_19s0014g01650.t01 | Wine grape | nucleus | 42.62 | 13.07 |
| CDX70356 | Canola | nucleus, plastid | 16.39 | 12.15 |
| CDY06203 | Canola | nucleus | 40.44 | 11.49 |
| CDY09981 | Canola | nucleus | 39.89 | 11.42 |
| CDY65645 | Canola | nucleus, plastid | 31.69 | 11.39 |
| CDX78390 | Canola | nucleus | 14.75 | 11.3 |
| Solyc12g014170.1.1 | Tomato | nucleus | 43.17 | 11.27 |
| PGSC0003DMT400039787 | Potato | nucleus | 43.17 | 11.22 |
| Os02t0250300-01 | Rice | nucleus | 39.34 | 10.98 |
| HORVU6Hr1G045030.1 | Barley | nucleus | 37.7 | 10.9 |
| TraesCS6D01G177700.1 | Wheat | cytosol, plastid | 37.7 | 10.87 |
| HORVU6Hr1G045070.4 | Barley | nucleus | 37.7 | 10.85 |
| CDY31648 | Canola | nucleus | 25.14 | 10.82 |
| PGSC0003DMT400032373 | Potato | nucleus | 43.17 | 10.66 |
| Zm00001d053427_P007 | Maize | nucleus | 39.34 | 10.54 |
| Solyc07g062660.2.1 | Tomato | nucleus | 43.17 | 10.51 |
| CDX84278 | Canola | nucleus | 25.14 | 10.5 |
| Zm00001d016131_P006 | Maize | nucleus | 38.25 | 10.43 |
| CDX86532 | Canola | nucleus | 39.34 | 10.21 |
| OQU84709 | Sorghum | nucleus | 39.34 | 10.11 |
| CDX90608 | Canola | cytosol | 19.67 | 10.11 |
| CDY29075 | Canola | cytoskeleton, cytosol, nucleus | 19.67 | 9.89 |
| CDY72432 | Canola | cytosol | 24.04 | 8.71 |
| CDX70357 | Canola | plastid | 18.03 | 8.4 |
| Zm00001d039369_P004 | Maize | plastid | 42.08 | 8.22 |
| CDY68605 | Canola | cytosol | 24.04 | 8.01 |
| CDX84396 | Canola | nucleus | 25.68 | 7.67 |
| CDY20057 | Canola | nucleus | 26.23 | 7.44 |
| CDY43984 | Canola | endoplasmic reticulum | 14.75 | 6.18 |
| CDY13699 | Canola | nucleus | 13.66 | 5.47 |
| CDX83673 | Canola | nucleus | 13.66 | 5.02 |
| CDY16729 | Canola | nucleus | 26.23 | 4.2 |
| CDY48139 | Canola | nucleus | 13.66 | 2.83 |
Protein Annotations
| Gene3D:1.20.1270.220 | Gene3D:1.20.920.10 | MapMan:35.1 | InterPro:Bromodomain | InterPro:Bromodomain-like_sf | EnsemblPlants:CDX82101 |
| ProteinID:CDX82101 | ProteinID:CDX82101.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00137140001 |
| InterPro:IPR001487 | InterPro:IPR027353 | InterPro:IPR036427 | InterPro:IPR038336 | InterPro:NET_dom | InterPro:NET_sf |
| PFAM:PF17035 | PFscan:PS50014 | PFscan:PS51525 | PANTHER:PTHR22880 | PANTHER:PTHR22880:SF147 | SUPFAM:SSF47370 |
| UniParc:UPI0004EE25B4 | SEG:seg | : | : | : | : |
Description
BnaC02g21890D
Coordinates
chrLK031827:+:765282..765890
Molecular Weight (calculated)
20940.4 Da
IEP (calculated)
4.308
GRAVY (calculated)
-0.765
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLGTVKSRL SKSWYESPSE FAEDVRLTFN NVGHDVHRMA QFSLNMFEEK WAPLETQYES LNSRQQPSPL PPILVETRTL ETAESMTNAV EPLALAVSPE
101: KREEEESKVV EIIKKTNPDL AQQEDDIELD IDSLDLQTLW ELYRFVTGYK EGLSKKKEEQ GLSSEREAES VHNGVQEPVR ANN
101: KREEEESKVV EIIKKTNPDL AQQEDDIELD IDSLDLQTLW ELYRFVTGYK EGLSKKKEEQ GLSSEREAES VHNGVQEPVR ANN
001: MSSEHISGGG ASKTKKHKWS SSQNRPKPMG VSRQERSVPL VSPSNSFASE DDHHMLKISL SSISKLEVRN LKRKLKSELD EVRSLIKRFD PEANPGGSMA
101: KSGVVGRSKK VKTGNGGGKK SGHGADKGTV QIFKNCNSLL TKLMKHKSAW VFNVPVDAKG LGLHDYHNIV KEPMDLGTVK TKLGKSLYKS PLDFAEDVRL
201: TFNNAILYNP IGHDVYRFAE LLLNMFEDKW VSIEMQYDNL HRKFKPTRDI EFPAPAPSIA PIVEPLPAIV PSPSPSSPPP PPPPPVAAPV LENRTWEREE
301: SMTIPVEPEA VITAPEKAEE EEAPVNNRDL TLEEKRRLSE ELQDLPYDKL ETVVQIIKKS NPELSQKDDE IELDIDSLDI NTLWELYRFV TGYKESLSKK
401: NEAHGFGSER DAESVHNSIQ EPTTLVSGTT TSRVTESGKA IRTSSPARQE NNASGSSSSN SSSSDSGSCS SDTDSDSSSG RGSDNGN
101: KSGVVGRSKK VKTGNGGGKK SGHGADKGTV QIFKNCNSLL TKLMKHKSAW VFNVPVDAKG LGLHDYHNIV KEPMDLGTVK TKLGKSLYKS PLDFAEDVRL
201: TFNNAILYNP IGHDVYRFAE LLLNMFEDKW VSIEMQYDNL HRKFKPTRDI EFPAPAPSIA PIVEPLPAIV PSPSPSSPPP PPPPPVAAPV LENRTWEREE
301: SMTIPVEPEA VITAPEKAEE EEAPVNNRDL TLEEKRRLSE ELQDLPYDKL ETVVQIIKKS NPELSQKDDE IELDIDSLDI NTLWELYRFV TGYKESLSKK
401: NEAHGFGSER DAESVHNSIQ EPTTLVSGTT TSRVTESGKA IRTSSPARQE NNASGSSSSN SSSSDSGSCS SDTDSDSSSG RGSDNGN
Arabidopsis Description
GTE5Transcription factor GTE5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.