CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012810.1-P	Field mustard	cytosol	98.03	98.03
CDY29075	Canola	cytoskeleton, cytosol, nucleus	94.94	92.86
AT3G52280.2	Thale cress	nucleus	78.37	72.28
Solyc09g015660.2.1	Tomato	cytosol	53.93	53.19
KRH04734	Soybean	nucleus	55.34	51.98
VIT_13s0019g03950.t01	Wine grape	nucleus	50.84	46.89
EER87804	Sorghum	nucleus	42.13	43.35
TraesCS1B01G385900.1	Wheat	cytosol	41.57	43.27
TraesCS1A01G367300.1	Wheat	cytosol	42.13	42.98
TraesCS1D01G373000.1	Wheat	cytosol	42.13	41.78
TraesCS4A01G377900.2	Wheat	cytosol	40.73	41.31
TraesCS7A01G080900.1	Wheat	nucleus	40.73	41.31
HORVU5Hr1G097840.6	Barley	cytosol	40.45	41.14
Zm00001d036092_P004	Maize	endoplasmic reticulum, nucleus, plastid	42.13	41.1
TraesCS7D01G074500.1	Wheat	cytosol	40.45	41.03
GSMUA_Achr8P29340_001	Banana	nucleus	44.94	40.92
HORVU7Hr1G018300.6	Barley	cytosol	39.33	39.77
Os06t0138000-01	Rice	cytosol, nucleus	13.76	39.52
CDY31648	Canola	nucleus	39.61	33.18
CDX84278	Canola	nucleus	39.33	31.96
GSMUA_Achr8P34430_001	Banana	nucleus	36.52	30.23
CDY15568	Canola	nucleus	17.98	20.19
CDX82101	Canola	nucleus	10.11	19.67
CDX82103	Canola	plastid	16.85	19.17
CDY21732	Canola	cytosol	13.48	18.9
CDX83890	Canola	nucleus, plastid	19.38	18.85
CDX96751	Canola	nucleus, plastid	18.82	18.31
CDY19175	Canola	nucleus, plastid	18.82	17.45
CDY65656	Canola	cytosol	10.11	17.39
CDY48040	Canola	nucleus, plastid	19.1	17.35
CDY26215	Canola	mitochondrion	19.1	16.43
CDY08771	Canola	nucleus	15.73	15.82
CDY66497	Canola	nucleus	5.9	13.55
CDY65645	Canola	nucleus, plastid	17.7	12.38
CDY26219	Canola	nucleus	6.46	12.37
CDY09981	Canola	nucleus	21.35	11.89
CDY06203	Canola	nucleus	21.07	11.65
CDX70357	Canola	plastid	12.64	11.45
CDX86532	Canola	nucleus	21.35	10.78
CDY20057	Canola	nucleus	18.82	10.39
CDY72432	Canola	cytosol	14.04	9.9
CDX81848	Canola	cytosol, nucleus, plastid	7.58	9.82
CDY68605	Canola	cytosol	14.33	9.29
CDY43984	Canola	endoplasmic reticulum	10.67	8.7
CDX78390	Canola	nucleus	5.62	8.37
CDX70356	Canola	nucleus, plastid	5.62	8.1
CDX84396	Canola	nucleus	11.52	6.69
CDY13699	Canola	nucleus	7.87	6.13
CDX83673	Canola	nucleus	7.87	5.62
CDY48139	Canola	nucleus	13.2	5.32
CDY16729	Canola	nucleus	15.73	4.9

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	EnsemblPlants:CDX90608
ProteinID:CDX90608	ProteinID:CDX90608.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00151249001	InterPro:GTE1/GTE6
InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	InterPro:NET_dom	InterPro:NET_sf
PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880
PANTHER:PTHR22880:SF163	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0004EE8689	SEG:seg	:

Description

BnaA03g41730D

Coordinates

chrLK031863:+:1096763..1098555

Molecular Weight (calculated)

41115.2 Da

IEP (calculated)

6.148

GRAVY (calculated)

-0.616

Length

356 amino acids

Sequence
(BLAST)

001: MTESVPVSSD IPAGESKILP VEAETIKQRV EEVVQWVDSL EHKLAQVENF YSTIAVSNSS PRHVVGIRKV QQEAARREAV AAKRMHDLMR QFGTIFRQIT
101: QHKCAWPFMH PVDVESLGLD DYYEVIDEPM DFSTIKNQME AKDGTGYKHV MQIYADMRLV FENAMKYNED ASDVYSMAKT LLQKFEEKWA HFLPKVQEEE
201: KIREEEEKQA AMEALLAKEA SHTKTTRELS NEICNVNDEL EKLRNVVVGR CRKITSEEKR NIGFALLKLS TDELQKVLGI VAQADPRFQT RAEEVTIEMD
301: VLDEPTLWRL KFLVKDALEN AKKKEETIRT KQNNEVSNKR NAVNKLAERR TKRPCL

Best Arabidopsis Sequence Match ( AT3G52280.1 )
(BLAST)

001: MADSVPGHVA GGGLQGFSVD AECIKQRVDE VLQWVDSLEH KLKEVEEFYS SIGVSNSGSI GKDTEKGRHV VGIRKIQQEA ARREAVAAKR MQDLMRQFGT
101: IFRQITQHKC AWPFMHPVNV EGLGLHDYFE VIDKPMDFST IKNQMEAKDG TGYKHVMQIY ADMRLVFENA MNYNEETSDV YSMAKKLLEK FEEKWAHFLP
201: KVQEEEKIRE EEEKQAAKEA LLAKEASHIK TTRELGNEIC HANDELEKLM RKVVERCRKI TIEEKRNIGL ALLKLSPDDL QKVLGIVAQA NPSFQPRAEE
301: VSIEMDILDE PTLWRLKFFV KDALDNAMKK KKEEETKTRE LSGAQKKEVS KKRNATTKLA ERKTKRSRI

Arabidopsis Description

GTE6General transcription factor group E6 [Source:UniProtKB/TrEMBL;Acc:F4J6V6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.