Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15568 | Canola | nucleus | 44.54 | 99.05 |
| Bra030643.1-P | Field mustard | nucleus | 93.48 | 89.17 |
| CDY09981 | Canola | nucleus | 74.33 | 82.0 |
| CDY06203 | Canola | nucleus | 74.18 | 81.21 |
| AT1G06230.2 | Thale cress | nucleus | 82.13 | 75.59 |
| CDY68605 | Canola | cytosol | 57.3 | 73.59 |
| CDY72432 | Canola | cytosol | 50.21 | 70.1 |
| KRH27020 | Soybean | nucleus | 46.24 | 50.46 |
| KRH22304 | Soybean | nucleus | 45.67 | 50.31 |
| Solyc10g008070.2.1 | Tomato | nucleus | 25.53 | 49.72 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 30.78 | 48.55 |
| PGSC0003DMT400027387 | Potato | nucleus | 39.57 | 48.44 |
| VIT_12s0028g02510.t01 | Wine grape | nucleus | 44.26 | 47.71 |
| GSMUA_Achr11P... | Banana | nucleus | 27.94 | 46.57 |
| GSMUA_Achr7P09350_001 | Banana | nucleus, plastid | 32.48 | 44.55 |
| CDY66497 | Canola | nucleus | 9.79 | 44.52 |
| CDX96751 | Canola | nucleus, plastid | 22.41 | 43.17 |
| CDY19175 | Canola | nucleus, plastid | 23.4 | 42.97 |
| Zm00001d008922_P001 | Maize | plastid | 29.65 | 42.65 |
| CDX83890 | Canola | nucleus, plastid | 22.13 | 42.62 |
| TraesCS3D01G146600.1 | Wheat | nucleus, plastid | 29.79 | 41.5 |
| TraesCS3B01G164100.1 | Wheat | nucleus, plastid | 29.93 | 41.37 |
| EES02258 | Sorghum | plastid | 26.1 | 41.26 |
| TraesCS3A01G140500.1 | Wheat | nucleus, plastid | 29.79 | 41.18 |
| CDY26215 | Canola | mitochondrion | 23.83 | 40.58 |
| CDY48040 | Canola | nucleus, plastid | 22.27 | 40.05 |
| CDX82103 | Canola | plastid | 17.73 | 39.94 |
| KRH25703 | Soybean | nucleus | 49.5 | 39.93 |
| CDY26219 | Canola | nucleus | 10.5 | 39.78 |
| CDX82101 | Canola | nucleus | 10.21 | 39.34 |
| GSMUA_Achr1P11660_001 | Banana | nucleus | 28.51 | 39.18 |
| Os02t0250300-01 | Rice | nucleus | 36.17 | 38.87 |
| CDY08771 | Canola | nucleus | 19.29 | 38.42 |
| HORVU6Hr1G045030.1 | Barley | nucleus | 33.76 | 37.6 |
| HORVU6Hr1G045070.4 | Barley | nucleus | 33.9 | 37.58 |
| Os01t0214300-01 | Rice | cytosol, nucleus | 8.79 | 37.35 |
| Zm00001d016131_P006 | Maize | nucleus | 35.46 | 37.26 |
| TraesCS6D01G177700.1 | Wheat | cytosol, plastid | 33.33 | 37.01 |
| OQU84709 | Sorghum | nucleus | 36.17 | 35.81 |
| KRH55813 | Soybean | nucleus | 49.65 | 35.53 |
| CDY21732 | Canola | cytosol | 12.62 | 35.04 |
| CDY65656 | Canola | cytosol | 9.93 | 33.82 |
| Zm00001d053427_P007 | Maize | nucleus | 31.49 | 32.5 |
| CDX78390 | Canola | nucleus | 10.64 | 31.38 |
| CDY65645 | Canola | nucleus, plastid | 22.27 | 30.84 |
| CDX70356 | Canola | nucleus, plastid | 10.78 | 30.77 |
| CDX81848 | Canola | cytosol, nucleus, plastid | 11.21 | 28.73 |
| CDX90608 | Canola | cytosol | 10.78 | 21.35 |
| Zm00001d039369_P004 | Maize | plastid | 28.09 | 21.13 |
| CDX70357 | Canola | plastid | 11.77 | 21.12 |
| CDY29075 | Canola | cytoskeleton, cytosol, nucleus | 10.5 | 20.33 |
| CDY31648 | Canola | nucleus | 11.49 | 19.06 |
| CDY20057 | Canola | nucleus | 17.16 | 18.76 |
| CDX84278 | Canola | nucleus | 11.49 | 18.49 |
| CDY43984 | Canola | endoplasmic reticulum | 8.23 | 13.27 |
| CDX84396 | Canola | nucleus | 11.49 | 13.21 |
| CDY48139 | Canola | nucleus | 13.33 | 10.63 |
| CDY13699 | Canola | nucleus | 6.52 | 10.07 |
| CDY16729 | Canola | nucleus | 15.74 | 9.72 |
| CDX83673 | Canola | nucleus | 6.67 | 9.44 |
Protein Annotations
| Gene3D:1.20.1270.220 | Gene3D:1.20.920.10 | MapMan:15.5.54 | InterPro:Bromodomain | InterPro:Bromodomain-like_sf | EnsemblPlants:CDX86532 |
| ProteinID:CDX86532 | ProteinID:CDX86532.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSBRNA2T00145147001 | InterPro:GTE_bromo | InterPro:IPR001487 | InterPro:IPR027353 | InterPro:IPR036427 | InterPro:IPR038336 |
| InterPro:NET_dom | InterPro:NET_sf | PFAM:PF00439 | PFAM:PF17035 | PRINTS:PR00503 | PFscan:PS50014 |
| PFscan:PS51525 | PANTHER:PTHR22880 | PANTHER:PTHR22880:SF147 | SMART:SM00297 | SUPFAM:SSF47370 | UniParc:UPI0004EEF60F |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g01710D
Coordinates
chrLK031846:-:459239..462501
Molecular Weight (calculated)
77296.0 Da
IEP (calculated)
5.945
GRAVY (calculated)
-0.828
Length
705 amino acids
Sequence
(BLAST)
(BLAST)
001: MASEPVNGEG TDGAREKQKI KVYTRKGKGQ RKLSPFFAFD GDSREKPEGD SENNRQSPPQ TLAQESQKSP VSSVATEAPS EKVIDKPLDD ASLAPTDKNS
101: VEVPSQSNTG QDDVNTVVVD ENSIKESLAQ EDVTAMIVDK KAIEAPSQTI SAGDANTVVV DKNPIEVSSD EDVHVVDADN LIKESERDAP DAQQPAGVTS
201: DSAQSIHATA TESMPMEKDV DGRIKMHVPS KSKQEKEEIR KKLEDQLNVV RDLVKKIEDK EGEIGAYNDS RLLASTDINN GGGRILPGFA SGGLPREVIR
301: TPRHLNQLSI SVLENTQGVN EHVEKEKRTP KANQFYRTSE FLLGDKLPPA ESNKKSKSSA KKHGGEAGHG FSAGSKVFKN CSALLERLMK HKHGWVFNAP
401: VDVKGLGLHD YFAIIEHPMD LGTVKSALAN NLYKSPREFA EDVRLTFHNA MTYNPPGQDV HIMAEVLLQM FEERWAVIEA DYNRQLRFAA GYEMNLPAST
501: MSNTMDWSGL PSDLQHPKPT TTPGRTPTSA RTPALKKPKA NEPNKRDMTY EEKQKLSGQL QNLPPEKLDA IVQIVNKRNT AVKLRDEEIE VDIDSVDPET
601: LWELDRFVTN YKKGLSKKKR RAELAIQAKA EAERNSQKQM APAPVAHEFS REGGNTAKKT LPTQVPSQVD KQNNETSRSS SSSSSSSSSS SSSDSDSDSS
701: SSSGS
101: VEVPSQSNTG QDDVNTVVVD ENSIKESLAQ EDVTAMIVDK KAIEAPSQTI SAGDANTVVV DKNPIEVSSD EDVHVVDADN LIKESERDAP DAQQPAGVTS
201: DSAQSIHATA TESMPMEKDV DGRIKMHVPS KSKQEKEEIR KKLEDQLNVV RDLVKKIEDK EGEIGAYNDS RLLASTDINN GGGRILPGFA SGGLPREVIR
301: TPRHLNQLSI SVLENTQGVN EHVEKEKRTP KANQFYRTSE FLLGDKLPPA ESNKKSKSSA KKHGGEAGHG FSAGSKVFKN CSALLERLMK HKHGWVFNAP
401: VDVKGLGLHD YFAIIEHPMD LGTVKSALAN NLYKSPREFA EDVRLTFHNA MTYNPPGQDV HIMAEVLLQM FEERWAVIEA DYNRQLRFAA GYEMNLPAST
501: MSNTMDWSGL PSDLQHPKPT TTPGRTPTSA RTPALKKPKA NEPNKRDMTY EEKQKLSGQL QNLPPEKLDA IVQIVNKRNT AVKLRDEEIE VDIDSVDPET
601: LWELDRFVTN YKKGLSKKKR RAELAIQAKA EAERNSQKQM APAPVAHEFS REGGNTAKKT LPTQVPSQVD KQNNETSRSS SSSSSSSSSS SSSDSDSDSS
701: SSSGS
001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT
Arabidopsis Description
GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.