Factsheet for AT1G06230.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15568	Canola	nucleus	36.42	88.01
CDY06203	Canola	nucleus	69.58	82.76
Bra032431.1-P	Field mustard	nucleus	70.89	82.65
CDX86532	Canola	nucleus	75.59	82.13
Bra015485.1-P	Field mustard	nucleus	79.63	81.44
CDY09981	Canola	nucleus	67.89	81.38
Bra030643.1-P	Field mustard	nucleus	75.72	78.48
CDY68605	Canola	cytosol	55.09	76.87
CDY72432	Canola	cytosol	50.13	76.04
KRH27020	Soybean	nucleus	44.13	52.32
KRH22304	Soybean	nucleus	43.47	52.03
Solyc10g008070.2.1	Tomato	nucleus	23.63	50.0
PGSC0003DMT400027387	Potato	nucleus	37.08	49.31
GSMUA_Achr10P...	Banana	nucleus, plastid	28.72	49.22
VIT_12s0028g02510.t01	Wine grape	nucleus	41.12	48.17
GSMUA_Achr11P...	Banana	nucleus	26.24	47.52
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	30.16	44.94
Zm00001d008922_P001	Maize	plastid	27.55	43.06
KRH25703	Soybean	nucleus	48.43	42.45
EES02258	Sorghum	plastid	24.15	41.48
TraesCS3D01G146600.1	Wheat	nucleus, plastid	27.15	41.11
TraesCS3A01G140500.1	Wheat	nucleus, plastid	27.15	40.78
TraesCS3B01G164100.1	Wheat	nucleus, plastid	27.15	40.78
Os02t0250300-01	Rice	nucleus	34.07	39.79
Os01t0214300-01	Rice	cytosol, nucleus	8.62	39.76
GSMUA_Achr1P11660_001	Banana	nucleus	26.24	39.18
AT1G73150.1	Thale cress	plastid	23.5	39.05
KRH55813	Soybean	nucleus	48.96	38.07
AT1G17790.1	Thale cress	nucleus, plastid	24.15	37.99
Zm00001d016131_P006	Maize	nucleus	33.16	37.85
HORVU6Hr1G045030.1	Barley	nucleus	30.94	37.44
HORVU6Hr1G045070.4	Barley	nucleus	31.07	37.42
TraesCS6D01G177700.1	Wheat	cytosol, plastid	30.81	37.17
OQU84709	Sorghum	nucleus	34.2	36.8
Zm00001d053427_P007	Maize	nucleus	29.63	33.24
AT5G65630.1	Thale cress	nucleus	21.67	28.14
AT5G10550.1	Thale cress	nucleus	20.5	27.02
AT2G34900.1	Thale cress	nucleus	11.62	23.06
AT3G52280.2	Thale cress	nucleus	11.23	22.28
Zm00001d039369_P004	Maize	plastid	26.11	21.34
AT3G01770.1	Thale cress	nucleus	13.19	16.29
AT5G46550.1	Thale cress	cytosol	10.44	16.19
AT5G14270.2	Thale cress	nucleus	14.36	15.97
AT3G27260.3	Thale cress	nucleus	15.93	14.84
AT5G63320.1	Thale cress	nucleus	17.1	12.35

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	EntrezGene:837133	UniProt:A0A178WDM0	ProteinID:AAF80220.1
ProteinID:AEE27964.1	ProteinID:AEE27965.1	ProteinID:AEE27966.1	ProteinID:ANM60626.1	ArrayExpress:AT1G06230	EnsemblPlantsGene:AT1G06230
RefSeq:AT1G06230	TAIR:AT1G06230	RefSeq:AT1G06230-TAIR-G	EnsemblPlants:AT1G06230.2	TAIR:AT1G06230.2	Unigene:At.15477
InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009294	GO:GO:0009987	GO:GO:0045931	GO:GO:0048364	Symbol:GTE4	InterPro:GTE_bromo
InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	InterPro:NET_dom	InterPro:NET_sf
RefSeq:NP_001184922.1	RefSeq:NP_001318932.1	RefSeq:NP_172113.1	RefSeq:NP_849601.1	ProteinID:OAP16520.1	PFAM:PF00439
PFAM:PF17035	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880
PANTHER:PTHR22880:SF147	UniProt:Q9LNC4	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI00000AB53D	SEG:seg

Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]

Coordinates

chr1:+:1906995..1911056

Molecular Weight (calculated)

84099.1 Da

IEP (calculated)

5.009

GRAVY (calculated)

-0.773

Length

766 amino acids

Sequence
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.