CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G146600.1	Wheat	nucleus, plastid	76.46	67.39
TraesCS3B01G164100.1	Wheat	nucleus, plastid	76.68	67.06
TraesCS3A01G140500.1	Wheat	nucleus, plastid	76.46	66.86
CDY15568	Canola	nucleus	32.06	45.11
Zm00001d039369_P004	Maize	plastid	90.81	43.22
Os01t0214300-01	Rice	cytosol, nucleus	15.92	42.77
CDX82101	Canola	nucleus	17.26	42.08
CDX82103	Canola	plastid	28.03	39.94
Bra031004.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	31.39	39.44
CDX83890	Canola	nucleus, plastid	31.39	38.25
CDX96751	Canola	nucleus, plastid	30.72	37.43
Bra008074.1-P	Field mustard	nucleus, plastid	32.29	36.73
CDY48040	Canola	nucleus, plastid	32.06	36.48
CDY19175	Canola	nucleus, plastid	31.39	36.46
CDY21732	Canola	cytosol	20.4	35.83
Bra025948.1-P	Field mustard	mitochondrion	32.96	35.51
CDY26215	Canola	mitochondrion	32.74	35.27
AT1G73150.1	Thale cress	plastid	36.1	34.92
GSMUA_Achr1P11660_001	Banana	nucleus	39.46	34.31
Bra016586.1-P	Field mustard	nucleus, plastid	33.18	33.64
VIT_19s0014g01650.t01	Wine grape	nucleus	44.84	33.5
PGSC0003DMT400027387	Potato	nucleus	43.05	33.33
AT1G17790.1	Thale cress	nucleus, plastid	36.1	33.06
KRH27020	Soybean	nucleus	47.09	32.51
KRH22304	Soybean	nucleus	45.74	31.88
VIT_12s0028g02510.t01	Wine grape	nucleus	45.74	31.19
KXG33001	Sorghum	plastid	15.47	30.4
OQU82367	Sorghum	nucleus	20.4	30.13
OQU84709	Sorghum	nucleus	47.53	29.78
CDY66497	Canola	nucleus	10.31	29.68
CDY06203	Canola	nucleus	41.26	28.57
Solyc10g008070.2.1	Tomato	nucleus	23.09	28.45
CDY09981	Canola	nucleus	40.13	28.01
Bra032431.1-P	Field mustard	nucleus	41.26	28.01
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	19.28	27.65
KXG24660	Sorghum	plastid	29.6	26.83
Solyc12g014170.1.1	Tomato	nucleus	42.15	26.82
PGSC0003DMT400039787	Potato	nucleus	41.7	26.42
PGSC0003DMT400032373	Potato	nucleus	43.72	26.32
CDX86532	Canola	nucleus	41.26	26.1
Solyc07g062660.2.1	Tomato	nucleus	43.72	25.93
CDY26219	Canola	nucleus	10.76	25.81
CDX81848	Canola	cytosol, nucleus, plastid	15.7	25.45
Bra015485.1-P	Field mustard	nucleus	42.6	25.37
Bra030643.1-P	Field mustard	nucleus	41.93	25.3
AT1G06230.2	Thale cress	nucleus	41.48	24.15
KRH25703	Soybean	nucleus	45.07	23.0
EER87804	Sorghum	nucleus	17.49	22.54
CDY72432	Canola	cytosol	24.89	21.98
CDY68605	Canola	cytosol	26.46	21.49
KRH55813	Soybean	nucleus	44.62	20.2
EES09391	Sorghum	cytosol, mitochondrion, nucleus	15.25	15.63
EES07108	Sorghum	nucleus	22.87	14.35
KXG24325	Sorghum	nucleus	22.65	14.27
EER97261	Sorghum	nucleus	14.57	13.35
EES09393	Sorghum	nucleus	15.25	11.24

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	UniProt:C5XL16
ncoils:Coil	EnsemblPlants:EES02258	ProteinID:EES02258	ProteinID:EES02258.2	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336
InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014
PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF181	SMART:SM00297	EnsemblPlantsGene:SORBI_3003G018900	SUPFAM:SSF47370
UniParc:UPI00081ADBE8	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:1702673..1704104

Molecular Weight (calculated)

49467.5 Da

IEP (calculated)

9.678

GRAVY (calculated)

-0.803

Length

446 amino acids

Sequence
(BLAST)

001: MAAGPPSPSG KPYSRKSHAS SKAPSVPSFD AHNGPLLPTV TFSLPSTTAS RRELRRRLSS ELSQVRAAAK RLNSLSAPAP SSALSATDPS TPLPPHPPAS
101: KHKSKKGGGA PHPHPHPHPH PHPHLSAEAR RKLYAPVFKT CSVLLQRLMK HKHSWVFNKP VDASALGLHD YHTIITKPMD LGTVKSKLGA GQYKSPREFA
201: GDVRLTFQNA MTYNPKGQDV HFMAEQLLNM FEEKWPEIEA EVAQLSPQPP TPSSAAPRKP KEIDNSRVLE RSDSTVHAAA MEATPKTHTG RPPVLKKPKA
301: REPNKRDMTF WEKQRLSNNL QDLPPEKLDN VVQIIKKRNL SLSQHDDEIE VDIDSFDVET LWELDRFVTN YRKSITKNKR KAELELSAVR PDEADPDQEP
401: EKVEHVRQDE PDQDQIPAVQ EPIPEREAVD VAPPKDNAAG GPVVCL

Best Arabidopsis Sequence Match ( AT1G06230.2 )
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Arabidopsis Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.