CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01931
EES05370
EES11006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01770.1	EES01931	AT3G48360.1	15316289
AT3G01770.1	EES05370	AT3G48360.1	15316289
AT3G01770.1	EES11006	AT3G48360.1	15316289
AT3G01770.1	EES01931	AT5G63160.1	15316289
AT3G01770.1	EES05370	AT5G63160.1	15316289
AT3G01770.1	EES11006	AT5G63160.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035167_P001	Maize	nucleus	86.44	80.74
Zm00001d049638_P009	Maize	nucleus	82.2	74.9
TraesCS7D01G309100.1	Wheat	nucleus	61.86	58.4
TraesCS7A01G312700.2	Wheat	nucleus	61.86	58.4
TraesCS7B01G212400.2	Wheat	nucleus	61.44	58.0
HORVU7Hr1G074620.7	Barley	cytosol, mitochondrion, nucleus	61.86	56.23
Bra025262.1-P	Field mustard	nucleus	35.17	46.03
CDY13699	Canola	nucleus	27.54	42.67
GSMUA_Achr8P01140_001	Banana	nucleus	45.2	42.61
VIT_17s0000g01830.t01	Wine grape	nucleus	43.79	41.06
KRH57199	Soybean	nucleus	42.37	40.6
GSMUA_Achr8P08920_001	Banana	nucleus	36.86	40.15
KRH63729	Soybean	nucleus	43.93	39.72
KRH07021	Soybean	nucleus	41.38	39.38
CDY20057	Canola	nucleus	35.88	39.38
Bra038624.1-P	Field mustard	nucleus	13.42	39.26
VIT_14s0171g00380.t01	Wine grape	nucleus	40.82	39.21
KRH54219	Soybean	nucleus	43.5	39.09
Bra039088.1-P	Field mustard	nucleus	35.88	39.02
CDX83673	Canola	nucleus	27.26	38.76
KRG94435	Soybean	nucleus	40.11	38.27
GSMUA_Achr10P...	Banana	nucleus	34.32	38.09
Solyc02g093880.2.1	Tomato	nucleus	38.84	37.93
Solyc03g111090.2.1	Tomato	nucleus	41.81	37.9
GSMUA_Achr2P20970_001	Banana	nucleus	38.14	37.5
PGSC0003DMT400052108	Potato	nucleus	38.56	37.45
CDX84396	Canola	nucleus	32.2	37.19
PGSC0003DMT400039290	Potato	nucleus	41.1	37.02
AT5G14270.2	Thale cress	nucleus	35.88	36.87
AT3G01770.1	Thale cress	nucleus	32.06	36.61
KRH07022	Soybean	nucleus	39.69	35.75
EES07108	Sorghum	nucleus	35.03	34.88
AT3G27260.3	Thale cress	nucleus	37.15	32.0
GSMUA_Achr3P02660_001	Banana	plasma membrane	29.52	31.96
EER97261	Sorghum	nucleus	21.75	31.62
GSMUA_Achr3P02670_001	Banana	nucleus	29.66	29.79
EES09393	Sorghum	nucleus	22.46	26.28
AT5G63320.1	Thale cress	nucleus	38.84	25.92
CDY48139	Canola	nucleus	31.78	25.45
OQU82367	Sorghum	nucleus	10.59	24.83
KXG33001	Sorghum	plastid	7.91	24.67
EER87804	Sorghum	nucleus	12.01	24.57
EES02258	Sorghum	plastid	14.27	22.65
CDY16729	Canola	nucleus	35.73	22.15
KXG24660	Sorghum	plastid	14.83	21.34
Bra035848.1-P	Field mustard	nucleus	35.59	21.16
OQU84709	Sorghum	nucleus	18.36	18.26
EES09391	Sorghum	cytosol, mitochondrion, nucleus	8.19	13.33

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	UniProt:A0A1B6PFI9	InterPro:Bromodomain	InterPro:Bromodomain-like_sf
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GTE_bromo	InterPro:IPR001487
InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	EnsemblPlants:KXG24325	ProteinID:KXG24325	ProteinID:KXG24325.2
InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014
PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF228	SMART:SM00297	EnsemblPlantsGene:SORBI_3007G026000	SUPFAM:SSF47370
UniParc:UPI000B8B9A51	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:2377519..2383288

Molecular Weight (calculated)

78811.1 Da

IEP (calculated)

4.637

GRAVY (calculated)

-0.882

Length

708 amino acids

Sequence
(BLAST)

001: MTAVDKKDLE MRLRHELAQV RDLQSRLFSR GPAVSMNGAA VMPAPPAGDV HPKKKVEKLK RSESMQTDRG APPPVAVAVA PPVASSFNYT SSFKQCANLL
101: KSLMGHGWAG PFLVPVDIVK LNIPDYFTIV KQPMDLGTIQ KKMKAGMYST PREFAADVRL TFSNAMNYNP VNNDVHLMAK TLSKNFETRW RLIEKKLPKP
201: DEKPPRDERP PQPDERPPQP VEKPPVREPT KKNSTKRVAI EKEDPSKKKP SKKNVPKQDI FREEDSADNP VLQPKKRKTS PLVQDAPLVE DIVPTRKRMM
301: TNEQKYDLSA RLQSYGAFIP DHVVEFIRSH ADNCDADEEE LELDMDALGD DTLFELQKLL DDYDRVNPSR NLTEEEPHEV ESQSQYELMN PSVCNNELIN
401: PSVCNDEGNE LIDEDVDIGE NDPPVSTLPP VVLEDETADR SSKHSTSSSS SSGSESSSSD SDSSSSSGSD TDAKAPQQNS GPKEKILPVD GLDKEKDSLN
501: TLNLPEQSTN PISVSADGEG GNVSEKQVSP DNPDKQIRAA LLRSRFADTI LKAREKALDQ TTKKDPEKLR REREELERVQ REERARLQAE AKAAEDVRKR
601: AEAAAAAEAA AEAKRQRELE REAARKALQE MEKTVDINEG SHFLKDLEML GSVTGEQIPN LVGETSPGFE MGSNTLEKLG LYMKNDEDDE DADFTDEPVV
701: DVEEGEID

Best Arabidopsis Sequence Match ( AT5G14270.2 )
(BLAST)

001: MTERNGGFPG DYCFEAPGGD YDEGSDSPRV SEGSNCSKRK VGETFGVSKM VLPLSGLSSS DRKELIRRLR QELEQIRVFQ KNFELSRTVA LTSSSASGLT
101: RVKSFGMSRC STGPGKTVNP ISAASKPTPV TTAVMLLMKQ CEALLKRLMS HQYGWVFNTP VDVVKLNILD YFNVIEHPMD LGTVKNKLTS GTYSCPSEFA
201: ADVRLTFSNA MTYNPPGNDV YVMADTLRKF FEVRWKTLEK KLSGTKVHTE PSNLDAHKEK HIVIPVPMAK KRKTTAVDCE NVVDPAKRVM TDEDRLKLGK
301: DLESLTEFPA QLINFLRDHN SNEGGIGDDE IEIDINDLSD HALFQLRDLL DEHLREIQNK KSSVEPCEIE LLHGSVPGNS SMQHCDGSEL DDEVVDIGEN
401: EHPTSSISPV TIEKDLVLGN SNGNSLGSVS GDPKMSSLPR ASKGLGTIDL EPMLDGATSA SPTRGLASVG GLDQLESASP EKISSVEADC QQDGNSAQNE
501: KQLPPEKSYR AAILKNRFAD IILKAREKPL NQNDTRDPEK LQREREELEL QKKKEKARLQ AEAKAAEEAR RKAEAQAAAE AAAEAKRKLE LEREAARQAL
601: MEMEQSVELN ENAKFLEDLE LLKTVDTDHL TNTIEEEDGP DVGLRSFSFG GSNPLEQLGL FMKQDEDEEE ADPLTSPAPE IDIEEGEID

Arabidopsis Description

BET9Bromodomain and extraterminal domain protein 9 [Source:UniProtKB/TrEMBL;Acc:F4K6Q7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.