Factsheet for GSMUA_Achr3P02660_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 5
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr6P12110_001
GSMUA_Achr6P12420_001
GSMUA_Achr9P02050_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01770.1	GSMUA_Achr11P...	AT3G48360.1	15316289
AT3G01770.1	GSMUA_Achr6P12110_001	AT3G48360.1	15316289
AT3G01770.1	GSMUA_Achr6P12420_001	AT3G48360.1	15316289
AT3G01770.1	GSMUA_Achr9P02050_001	AT3G48360.1	15316289
AT3G01770.1	GSMUA_AchrUn_...	AT3G48360.1	15316289
AT3G01770.1	GSMUA_AchrUn_...	AT3G48360.1	15316289
AT3G01770.1	GSMUA_Achr11P...	AT5G63160.1	15316289
AT3G01770.1	GSMUA_Achr6P12110_001	AT5G63160.1	15316289
AT3G01770.1	GSMUA_Achr6P12420_001	AT5G63160.1	15316289
AT3G01770.1	GSMUA_Achr9P02050_001	AT5G63160.1	15316289
AT3G01770.1	GSMUA_AchrUn_...	AT5G63160.1	15316289
AT3G01770.1	GSMUA_AchrUn_...	AT5G63160.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P02670_001	Banana	nucleus	76.45	70.92
GSMUA_Achr2P20970_001	Banana	nucleus	55.2	50.14
GSMUA_Achr10P...	Banana	nucleus	44.34	45.45
GSMUA_Achr8P01140_001	Banana	nucleus	45.72	39.81
Bra025262.1-P	Field mustard	nucleus	32.72	39.56
VIT_14s0171g00380.t01	Wine grape	nucleus	43.73	38.81
KRH07021	Soybean	nucleus	43.58	38.31
VIT_17s0000g01830.t01	Wine grape	nucleus	44.04	38.15
KRG94435	Soybean	nucleus	42.81	37.74
CDY20057	Canola	nucleus	37.16	37.67
GSMUA_Achr8P08920_001	Banana	nucleus	37.31	37.54
AT3G01770.1	Thale cress	nucleus	35.47	37.42
PGSC0003DMT400052108	Potato	nucleus	41.59	37.31
Bra039088.1-P	Field mustard	nucleus	36.85	37.02
Solyc02g093880.2.1	Tomato	nucleus	40.83	36.83
Os02t0601800-03	Rice	nucleus	39.6	36.27
KRH63729	Soybean	nucleus	43.43	36.27
KRH57199	Soybean	nucleus	40.83	36.13
TraesCS3A01G087800.1	Wheat	plastid	33.49	35.9
PGSC0003DMT400039290	Potato	nucleus	43.12	35.88
Solyc03g111090.2.1	Tomato	nucleus	42.66	35.72
KRH54219	Soybean	nucleus	42.97	35.66
TraesCS3D01G087900.4	Wheat	nucleus	38.69	35.34
TraesCS6D01G196600.3	Wheat	nucleus	37.92	35.28
Bra038624.1-P	Field mustard	nucleus	13.0	35.12
TraesCS6A01G214000.1	Wheat	nucleus	37.77	34.99
TraesCS3B01G103200.2	Wheat	nucleus	38.23	34.97
AT5G14270.2	Thale cress	nucleus	36.24	34.4
HORVU6Hr1G054560.16	Barley	nucleus	37.46	34.27
TraesCS6B01G244000.2	Wheat	plastid	37.46	34.03
TraesCS3B01G141400.2	Wheat	nucleus, plastid	37.0	33.94
TraesCS3A01G122200.1	Wheat	nucleus	36.7	33.66
KRH07022	Soybean	nucleus	40.21	33.46
TraesCS3D01G124100.1	Wheat	nucleus	36.39	33.38
EES07108	Sorghum	nucleus	36.09	33.19
Zm00001d017126_P001	Maize	nucleus	35.17	33.05
HORVU3Hr1G022660.1	Barley	nucleus	35.93	33.01
CDY13699	Canola	nucleus	22.94	32.82
HORVU3Hr1G015760.1	Barley	nucleus	26.91	31.88
Zm00001d035167_P001	Maize	nucleus	35.93	31.0
CDX83673	Canola	nucleus	23.39	30.72
TraesCS7D01G309100.1	Wheat	nucleus	35.02	30.53
AT3G27260.3	Thale cress	nucleus	38.23	30.41
TraesCS7A01G312700.2	Wheat	nucleus	34.71	30.27
Zm00001d049638_P009	Maize	nucleus	35.78	30.12
TraesCS7B01G212400.2	Wheat	nucleus	34.25	29.87
KXG24325	Sorghum	nucleus	31.96	29.52
HORVU7Hr1G074620.7	Barley	cytosol, mitochondrion, nucleus	34.71	29.14
CDX84396	Canola	nucleus	25.08	26.75
GSMUA_Achr4P27780_001	Banana	nucleus	23.39	22.7
GSMUA_Achr11P...	Banana	nucleus	14.68	22.7
GSMUA_Achr10P...	Banana	nucleus, plastid	15.44	22.6
AT5G63320.1	Thale cress	nucleus	36.39	22.43
GSMUA_Achr1P15650_001	Banana	nucleus	16.51	21.95
GSMUA_Achr3P00480_001	Banana	nucleus	17.13	21.46
CDY48139	Canola	nucleus	28.9	21.38
GSMUA_Achr1P11660_001	Banana	nucleus	16.36	20.86
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	15.75	20.04
GSMUA_Achr8P29340_001	Banana	nucleus	10.86	18.16
CDY16729	Canola	nucleus	29.05	16.64
GSMUA_Achr8P34430_001	Banana	nucleus	10.7	16.28
Bra035848.1-P	Field mustard	nucleus	29.05	15.95

Protein Annotations

Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr3G02660_001	EnsemblPlants:GSMUA_Achr3P02660_001	EnsemblPlants:GSMUA_Achr3T02660_001	InterPro:GTE_bromo
InterPro:IPR001487	InterPro:IPR036427	UniProt:M0SB84	PFAM:PF00439	PRINTS:PR00503	PFscan:PS50014
PANTHER:PTHR22880	PANTHER:PTHR22880:SF228	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0002966E03	SEG:seg

Description

Putative bromodomain domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G02660_001]

Coordinates

chr3:-:1744986..1748970

Molecular Weight (calculated)

73168.0 Da

IEP (calculated)

7.259

GRAVY (calculated)

-0.683

Length

654 amino acids

Sequence
(BLAST)

001: MAPAVALEYT KAKRMKRSSQ VLSSKAKEKP PRSSQGYRSG SIPDCQHDSK KMVESDGSGS AIRANSSGNS SSPNRKKRID VNVDRCNGFN APLEVISLSK
101: KSGSKSKTPR LRSEPEHFQM LRKKVPSKSV TTVGISSSSS INGSEKIRGQ SIGPQMTGGL SGKSVPQKTV PVSDLLMKQC EALLKKLMSH QFAWVFDHPV
201: DAVKLNIPDY HTIIKRPMDL GTIKSKLTSG AYSSPWGFAS DVRLTFKNAM TYNPPNDDVH IMAVALSKFF ESQWKFIEKK SAAADAHIEK ETQSNKSELS
301: KKRKMPPTDY NGPVPEREKS KMMDEEKQSL NRCLESLSAD LSDHNIDFLR WQSGNMKQSI EETKIHNDSF CDDKRTLLDN YIKEREVQQP AKTERVNDTG
401: VCTSLMHPCK GNDLDDEDVD ICDDDPPMPS YPPLELQKDL GPLSGLTPLE MDVDSKPLSG DSDGCPEGKH ASSERKVSPE KLYRTVWLKS RFADTIVKAQ
501: NSLDQAAEDA RRRAEVEAAA EAKRKRERER EAARQALSQA CTCFCLVIFF QCLLTLMQIL LTLLQMEKTA EIDDYRLVLK DLEILTRIPA GRIPMSLNEK
601: CPVHYFLDDV EDFRFGGINP MEQLGSFMKV DDEEEEEGKT KRAPPSDVEE GEIV

Best Arabidopsis Sequence Match ( AT3G01770.1 )
(BLAST)

001: MTVRNGGFPG DYNRNSFDSP GGCDDSPNAS KDDETFGVPR IVLPLSDLSS SERRKWIHTL RQELEQLRSF QKSVGDLLPI SKIVTSTPAS NVSRPKSFGM
101: SRCSTGPGKR VLPFTATKPE PVTTSTMLRM KQCESLLKRL MSQQHCWLFN TPVDVVKLNI PDYFTIIKHP MDLGTVKSKL TSGTYSSPSE FSADVRLTFR
201: NAMTYNPSDN NVYRFADTLS KFFEVRWKTI EKKSSGTKSE PSNLATLAHK DIAIPEPVAK KRKMNAVKRN SLLEPAKRVM TDEDRVKLGR DLGSLTEFPV
301: QIINFLRDHS SKEERSGDDE IEIDINDLSH DALFQLRDLF DEFLRENQKK DSNGEPCVLE LLHGSGPGNS LTQHCDGSEL EDEDVDIGNY EHPISHISTV
401: RTEKDSVGGL NQMEDASRGK LSLIEGADGH QDGNSAPKEK ELPPEKRYRA ALLKNRFADI ILKAQEITLN QNEKRDPETL QREKEELELQ KKKEKARLQA
501: EAKEAEEARR KAEAQEAKRK LELEREAARQ ALLEMEKSVE INENTRFLKD LELLKTVNTD QLRNLRDVGS ESDGLAVFGF GGSNPLEQLG LFMKHEEDED
601: ESDMLAFPDP GNEVEEGEID

Arabidopsis Description

GTE11Transcription factor GTE11 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZB7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.