Factsheet for TraesCS3A01G087800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G323000.1
TraesCS2A01G323200.1
TraesCS2B01G359400.1
TraesCS2B01G359600.1
TraesCS2D01G339700.1
TraesCS2D01G339900.1
TraesCS3A01G413600.1
TraesCS3A01G413700.1
TraesCS3B01G448000.1
TraesCS3B01G448100.1
TraesCS3D01G408000.1
TraesCS3D01G408100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01770.1	TraesCS2A01G323000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2A01G323200.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2B01G359400.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2B01G359600.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2D01G339700.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2D01G339900.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3A01G413600.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3A01G413700.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3B01G448000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3B01G448100.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3D01G408000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3D01G408100.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2A01G323000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2A01G323200.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2B01G359400.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2B01G359600.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2D01G339700.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2D01G339900.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3A01G413600.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3A01G413700.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3B01G448000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3B01G448100.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3D01G408000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3D01G408100.1	AT5G63160.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G087900.4	Wheat	nucleus	98.03	83.52
TraesCS3B01G103200.2	Wheat	nucleus	96.89	82.66
TraesCS6A01G214000.1	Wheat	nucleus	86.89	75.07
HORVU3Hr1G015760.1	Barley	nucleus	65.9	72.83
TraesCS3A01G122200.1	Wheat	nucleus	85.08	72.79
Os02t0601800-03	Rice	nucleus	79.18	67.65
EES07108	Sorghum	nucleus	74.75	64.14
Zm00001d017126_P001	Maize	nucleus	72.95	63.94
Bra038624.1-P	Field mustard	nucleus	16.39	41.32
Bra025262.1-P	Field mustard	nucleus	36.56	41.22
VIT_17s0000g01830.t01	Wine grape	nucleus	46.56	37.62
GSMUA_Achr8P01140_001	Banana	nucleus	46.07	37.42
VIT_14s0171g00380.t01	Wine grape	nucleus	44.26	36.63
GSMUA_Achr8P08920_001	Banana	nucleus	38.85	36.46
CDY13699	Canola	nucleus	27.05	36.1
KRH63729	Soybean	nucleus	45.9	35.76
KRH57199	Soybean	nucleus	42.95	35.45
KRH07021	Soybean	nucleus	42.62	34.95
KRH54219	Soybean	nucleus	45.08	34.9
GSMUA_Achr10P...	Banana	nucleus	36.39	34.8
Bra039088.1-P	Field mustard	nucleus	36.89	34.56
CDY20057	Canola	nucleus	36.39	34.42
KRG94435	Soybean	nucleus	41.8	34.37
GSMUA_Achr2P20970_001	Banana	nucleus	40.33	34.17
PGSC0003DMT400052108	Potato	nucleus	40.82	34.16
AT3G01770.1	Thale cress	nucleus	34.43	33.87
Solyc03g111090.2.1	Tomato	nucleus	43.28	33.8
GSMUA_Achr3P02660_001	Banana	plasma membrane	35.9	33.49
Solyc02g093880.2.1	Tomato	nucleus	39.67	33.38
CDX83673	Canola	nucleus	27.21	33.33
AT5G14270.2	Thale cress	nucleus	37.54	33.24
PGSC0003DMT400039290	Potato	nucleus	42.62	33.08
CDX84396	Canola	nucleus	32.46	32.3
TraesCS7A01G312700.2	Wheat	nucleus	38.03	30.93
GSMUA_Achr3P02670_001	Banana	nucleus	35.74	30.92
KRH07022	Soybean	nucleus	39.84	30.92
AT3G27260.3	Thale cress	nucleus	38.85	28.83
TraesCS7A01G539800.2	Wheat	nucleus, plastid	25.25	28.05
TraesCS3A01G234100.1	Wheat	cytosol, nucleus, plastid	8.52	24.19
TraesCS3A01G234000.1	Wheat	cytosol	8.69	24.09
TraesCS3A01G234600.1	Wheat	cytosol, nucleus, plastid	8.36	23.72
TraesCS3A01G234500.1	Wheat	cytosol	8.52	23.64
AT5G63320.1	Thale cress	nucleus	40.49	23.28
TraesCS2A01G466700.3	Wheat	cytosol, mitochondrion, nucleus, plastid	17.54	22.91
CDY48139	Canola	nucleus	29.67	20.48
TraesCS3A01G140500.1	Wheat	nucleus, plastid	16.56	19.8
CDY16729	Canola	nucleus	37.05	19.79
Bra035848.1-P	Field mustard	nucleus	37.05	18.98
TraesCS7A01G080900.1	Wheat	nucleus	10.82	18.8
TraesCS4A01G377900.2	Wheat	cytosol	10.82	18.8
TraesCS1A01G367300.1	Wheat	cytosol	10.49	18.34

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353
InterPro:IPR036427	InterPro:IPR038336	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035
PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF231	SMART:SM00297
SUPFAM:SSF47370	EnsemblPlantsGene:TraesCS3A01G087800	EnsemblPlants:TraesCS3A01G087800.1	TIGR:cd05506	SEG:seg	:

Description

No Description!

Coordinates

chr3A:+:56668686..56676006

Molecular Weight (calculated)

67192.4 Da

IEP (calculated)

4.560

GRAVY (calculated)

-0.769

Length

610 amino acids

Sequence
(BLAST)

001: MPVSRAPGFS SSAAPRAKKV QRGSHVLRGA KGRFLPTKPR PETSTVLPEA TILKQCESIL KKLMTQKFSH IFNVPVDVEK LNIPDYNEII KHPMDLGTIK
101: KQLDSGSYTS PFDFAADVRL TFNNAITYNP RGHAVHDMAI QLNKMFESRW KTVEKKLVSA ATKPHVEVDR ADSKRRKTPP VDRSDLSIDC VRPTEIVKPK
201: MTFEEKESFG NCLASLSEDP ELPGHIIDML QQCIDNNTDQ LGDEEIEIDI HALSDDILLE LKKHVDKYLQ ERDHQQTKSE PSENEAVNIS GLSHSSTNPC
301: KGGEPVEEDV DICGNASPIL IEKDPQIRTS KCGSPSSSSS GSGSSSSDSD SGSDAESEPE KAGSPAKLVK GIKIPEQPAE QEKSDDVISP VDVNNTTADV
401: ELHELDNESK AAPEDTVADV ELGEQDNESK AAPEGENAKP DRQVSPDKLL RAALLRGRYA DVIVKARGIL CQGGDKQEEL EKLQKEEKER LLAEGNAAME
501: ARRAEAEAES KRKRDLEREK ARQALQEMER TVEINDSVDP KDLEMLGTVT TEHIVSSVDE TSPEHSQDGM PSFLPGSGSM LEKLGLFMKV DEEEEEEEPC
601: SKDADEGEIN

Best Arabidopsis Sequence Match ( AT3G27260.3 )
(BLAST)

001: MVESAAFPGG YYRNTFEAPE ESEGSGSSAQ IDTEVTASEN SSTPARKCIM LNSNDEDPYG VQRQVISLYN MSQSERKDLI YRLKLELEQT KIVLKNAELQ
101: RMNPAAVSST SDRVGFSTGQ KISSRVSNSK KPSDFAVGSG KKVRHQNGTS RGWNRGTSGK FESSKETMTS TPNITLMKQC DTLLRKLWSH PHSWVFQAPV
201: DVVKLNIPDY LTTIKHPMDL GTVKKNLASG VYSSPHEFAA DVRLTFTNAM TYNPPGHDVH IMGDILSKLF EARWKTIKKK LPPCSMQTLP AVTLEPNDER
301: KAAISVPPAK KRKMASPVRE SVPEPVKPLM TEVERHRLGR QLESLLDELP AHIIDFLKKH NSNGGEIAED EIEIDIDVLS DEVLVTLRNL LDEYIQNKEA
401: KQTNVEPCEI ELINGSRPSN SSLQRGNEMA DEYVDGNEPP ISRSSSDSDS GSSEDQSDDA KPMVQGDSSK MPETANSEAQ RDENTRIDDL FVGSLCITGV
501: FITESTGALE QMDICSQQKL SSDESDGQHE GNILETPASS EKRYRAALLK NRFADIILKA REKPLPQNGI KGDPERLRKE REELVLQKKK EKARLQAEAE
601: AAEDARRQAE AEAAAEAAAE AKRKRELERE AARQALLKME KTVEINENSR FLEDLEMLSS SAPEQLPSSA EETSPERPLD ALGSFNLRGS NPLEQLGLYM
701: KQDDDEEEPE APAVPKPDET STERPLDALG SFKLGECNPL EQLGLYMKQD DGEEEEPEAP VVPKPNETSL ERPVDAFGSF NLKGSNPLEQ LGLYMKQDDD
801: EEEPEAPAVP NLANDVEEGE ID

Arabidopsis Description

GTE8Global transcription factor group E8 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.