CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54219	Soybean	nucleus	92.46	91.88
KRH57199	Soybean	nucleus	66.54	70.5
VIT_17s0000g01830.t01	Wine grape	nucleus	64.11	66.49
PGSC0003DMT400039290	Potato	nucleus	59.9	59.67
Solyc03g111090.2.1	Tomato	nucleus	59.51	59.67
GSMUA_Achr8P01140_001	Banana	nucleus	52.11	54.33
GSMUA_Achr8P08920_001	Banana	nucleus	44.83	54.0
KRH07021	Soybean	nucleus	50.7	53.36
KRG94435	Soybean	nucleus	50.19	52.97
GSMUA_Achr10P...	Banana	nucleus	42.53	52.19
Bra038624.1-P	Field mustard	nucleus	15.84	51.24
KRH07022	Soybean	nucleus	48.79	48.6
GSMUA_Achr2P20970_001	Banana	nucleus	44.57	48.47
Os02t0601800-03	Rice	nucleus	42.15	46.22
TraesCS3A01G087800.1	Wheat	plastid	35.76	45.9
Zm00001d035167_P001	Maize	nucleus	44.06	45.51
TraesCS6D01G196600.3	Wheat	nucleus	40.74	45.38
TraesCS6A01G214000.1	Wheat	nucleus	40.61	45.04
TraesCS3D01G087900.4	Wheat	nucleus	41.12	44.97
TraesCS3B01G103200.2	Wheat	nucleus	41.0	44.9
EES07108	Sorghum	nucleus	40.74	44.87
TraesCS7D01G309100.1	Wheat	nucleus	42.78	44.67
HORVU6Hr1G054560.16	Barley	nucleus	40.74	44.62
TraesCS7A01G312700.2	Wheat	nucleus	42.53	44.4
TraesCS7B01G212400.2	Wheat	nucleus	42.4	44.27
Zm00001d017126_P001	Maize	nucleus	39.34	44.25
TraesCS6B01G244000.2	Wheat	plastid	40.61	44.17
TraesCS3B01G141400.2	Wheat	nucleus, plastid	40.1	44.04
KXG24325	Sorghum	nucleus	39.72	43.93
TraesCS3D01G124100.1	Wheat	nucleus	39.85	43.76
CDX84396	Canola	nucleus	34.23	43.72
TraesCS3A01G122200.1	Wheat	nucleus	39.59	43.48
GSMUA_Achr3P02660_001	Banana	plasma membrane	36.27	43.43
HORVU7Hr1G074620.7	Barley	cytosol, mitochondrion, nucleus	43.04	43.26
HORVU3Hr1G022660.1	Barley	nucleus	38.95	42.84
Zm00001d049638_P009	Maize	nucleus	42.15	42.47
HORVU3Hr1G015760.1	Barley	nucleus	28.61	40.58
GSMUA_Achr3P02670_001	Banana	nucleus	34.74	38.58
AT5G63320.1	Thale cress	nucleus	48.4	35.72
CDY48139	Canola	nucleus	38.06	33.71
KRH11112	Soybean	nucleus	23.63	32.74
KRH21136	Soybean	nucleus	23.37	32.33
KRH10648	Soybean	nucleus	21.71	31.72
KRH10646	Soybean	nucleus	21.33	31.57
KRH21702	Soybean	nucleus	20.82	30.7
KRH27020	Soybean	nucleus	22.99	27.86
KRH22304	Soybean	nucleus	22.73	27.81
CDY16729	Canola	nucleus	38.95	26.71
Bra035848.1-P	Field mustard	nucleus	38.95	25.61
KRH45305	Soybean	nucleus	10.47	22.34
KRH04734	Soybean	nucleus	10.22	21.11
KRH12139	Soybean	nucleus	9.2	20.63
KRH25703	Soybean	nucleus	22.35	20.02
KRH37141	Soybean	cytosol, nucleus	6.64	19.05
KRH55813	Soybean	nucleus	21.97	17.46

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:100776368	MapMan:15.5.54	EMBL:ACUP02002709	InterPro:Bromodomain
InterPro:Bromodomain-like_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_04G193800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:K7KL46
EnsemblPlants:KRH63729	ProteinID:KRH63729	ProteinID:KRH63729.1	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439
PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF228
SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI00023C0347	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:46536723..46541714

Molecular Weight (calculated)

86732.2 Da

IEP (calculated)

4.766

GRAVY (calculated)

-0.829

Length

783 amino acids

Sequence
(BLAST)

001: MAPTVPIEFA GQKESRKYSH SQNMGKSRKY SKGYATGFVP DFRHAVETMG ESEGLGSLGR VDTELTALAD SCAPKGKRPG LNAGDGGYGS FDVPFQHFSL
101: SAMSGFERKD LKVRLTWELE QVREFRKKID GMNSNVVGLS LSSDIMSCSA GQKRPKLESQ HRTMEVSVPH GKKRPLPGHT GPKLKKSMSG HLEYAKPAAP
201: VTSYATLMKL CENVLNRLMS HQFGWVFNTP VDVVKLNIPD YFTVIKHPMD LGTVKKRITS GEYSNPMDFA ADVRLTFENA MFYNPAGNDV HIMAETLSKF
301: FETRWKAIEK KIPAIDSVAS EPSRPTHVET EISDRVPPTK KKKITPNDTN VKPEPVKRIM TVEEKQKLSL ELETMIGELP DSISDFLREQ SYNEGQINDD
401: EIEIDIDALS DDTLFKLRKL LDDYMLEKQK SLAKAGQCEM ELLNESGFSN SSMQPHKDAG EEQVEEDVDI IGGNDPPISN YPPLEIEKDV TNRNSKCSSL
501: SSSSSESGSS SSDSDSGSSS GSELDMAKTS EPLSATKENV GFDLTSDQNK GDPGNSETGK DSTNVGGQVE QSSQSGHVAT EPESHQDGES AASKRQVSPE
601: KLYRAALLRS RFADTILKAQ EKALEKDEKR DPEKLRIERE DLERRQKEEK ARLQAEAKAA EEAQRKAEAE AAAEAKRKRE LEREAARQAL QKMEKTVDIN
701: ENSHFLEDLE MLSAVHDEHL PSFKEETSAD QPQDGLGGIK LQGNPLEQLG LYMKEEEEEE EEEEPPPSGA AGPSNDVEEG EID

Best Arabidopsis Sequence Match ( AT5G63320.1 )
(BLAST)

0001: MGKARKHSRG RPSGFVPDYM QAVEPDEFVY SERMNSEASP PLKRRRFGLN GDNNGVSKEV LSLSKMSRSE RKNLVHKLKM ELQQVRDLSK KIASFSSDTV
0101: LLSPYNDHSC SDGPRRPPPE NFATFVGSQG KKRPPVRSDK QRNKKGPSRL NVPTSYTVAS VMKECETLLN RLWSHKSGWP FRTPVDPVML NIPDYFNVIK
0201: HPMDLGTIRS RLCKGEYSSP LDFAADVRLT FSNSIAYNPP GNQFHTMAQG ISKYFESGWK SIEKKIPMSK PPVIPLTSSA SLESEIPFEV APMRKKEAAM
0301: NDNKLRVEPA KLVMTDGEKK KLGQDLMALE EDFPQKIADL LREQSGSDGQ SGEGEIEIDI EALSDEILFM VRKLLDDYLR EKKKSMEKSE PCEMEIVHDS
0401: GFSNSPLQPS KGDLQIDEDV DIVGGNDPSV SSHPPLKIEK DAACRNNESS SSSSSSSESG SSSSDSDSCS SSGSETDSIK ASKPTSREEK KQPGVGIDKK
0501: EDDSNSEKIV VNDSLNELDQ LEHTVGEKST TMDAVVLVPD EETAPPERQI SPDSPDKRYR AAFLKNRFAD TIMKAREKAF TKGEKGDPEK LRIEREEFEK
0601: RLREEKERLQ AEAKAAEEAR RKAKAEAAEK ARREREQERE AARQALQKME KTVEINEGIR FMEDLQMLRA TGTEGDQLPT SMEVMSPKFS EDMLGLGSFK
0701: MESNSNPLEH LGLYMKMDED EDEEEDPPHF SQRKVEDNPF DRSEKQEHSP HRVEGEDQLV SGNEEPVSQE AHDNGDQEDG KPINPNEIER QLENMPEQES
0801: GVGDKEEQET EVVDMRKQEN EVVDMGVEEV HPLDRSEGRT LSPHRKERED PRASGNEESV SEKAQDYENQ RDEKINQSER EEQLENVLEQ ESSRDDDTGE
0901: QETEVVGVGK ELSLDKSEGQ TLSPHREEGE NQLDCGNEEL VSQKTQDNGN QEDEKSINKI EGEEQLANVP EQESRVTEKE EQETGVVDLG EQKSEVVEKG
1001: VEENEAVDNG EGVQGTEVSD KGGNETVVDG NGKVETEVVD KAGQKTDLVD QGEEDIDVEI D

Arabidopsis Description

GTE10NPX1 [Source:UniProtKB/TrEMBL;Acc:A0A178UIE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.