Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS6A01G214000.1 | Wheat | nucleus | 98.01 | 97.59 |
TraesCS6B01G244000.2 | Wheat | plastid | 98.29 | 95.97 |
HORVU6Hr1G054560.16 | Barley | nucleus | 93.46 | 91.89 |
TraesCS3D01G087900.4 | Wheat | nucleus | 88.62 | 87.01 |
TraesCS3D01G124100.1 | Wheat | nucleus | 84.5 | 83.31 |
Os02t0601800-03 | Rice | nucleus | 81.79 | 80.53 |
EES07108 | Sorghum | nucleus | 78.81 | 77.92 |
Zm00001d017126_P001 | Maize | nucleus | 76.1 | 76.87 |
VIT_17s0000g01830.t01 | Wine grape | nucleus | 46.94 | 43.71 |
GSMUA_Achr8P01140_001 | Banana | nucleus | 45.8 | 42.88 |
VIT_14s0171g00380.t01 | Wine grape | nucleus | 44.38 | 42.33 |
GSMUA_Achr8P08920_001 | Banana | nucleus | 38.98 | 42.15 |
Bra038624.1-P | Field mustard | nucleus | 14.37 | 41.74 |
KRH07021 | Soybean | nucleus | 44.1 | 41.67 |
Bra025262.1-P | Field mustard | nucleus | 32.01 | 41.59 |
KRG94435 | Soybean | nucleus | 43.24 | 40.97 |
KRH63729 | Soybean | nucleus | 45.38 | 40.74 |
GSMUA_Achr10P... | Banana | nucleus | 36.56 | 40.28 |
Bra039088.1-P | Field mustard | nucleus | 37.27 | 40.25 |
CDY20057 | Canola | nucleus | 36.84 | 40.16 |
KRH57199 | Soybean | nucleus | 41.82 | 39.78 |
KRH54219 | Soybean | nucleus | 44.52 | 39.72 |
GSMUA_Achr2P20970_001 | Banana | nucleus | 40.54 | 39.58 |
Solyc03g111090.2.1 | Tomato | nucleus | 43.67 | 39.31 |
PGSC0003DMT400039290 | Potato | nucleus | 43.53 | 38.93 |
PGSC0003DMT400052108 | Potato | nucleus | 40.26 | 38.82 |
Solyc02g093880.2.1 | Tomato | nucleus | 39.12 | 37.93 |
GSMUA_Achr3P02660_001 | Banana | plasma membrane | 35.28 | 37.92 |
AT3G01770.1 | Thale cress | nucleus | 33.14 | 37.58 |
CDY13699 | Canola | nucleus | 24.18 | 37.2 |
AT5G14270.2 | Thale cress | nucleus | 35.99 | 36.72 |
TraesCS7D01G309100.1 | Wheat | nucleus | 38.55 | 36.13 |
KRH07022 | Soybean | nucleus | 40.4 | 36.13 |
GSMUA_Achr3P02670_001 | Banana | nucleus | 34.42 | 34.33 |
CDX83673 | Canola | nucleus | 24.18 | 34.14 |
AT3G27260.3 | Thale cress | nucleus | 38.83 | 33.21 |
CDX84396 | Canola | nucleus | 28.88 | 33.12 |
TraesCS7D01G526000.1 | Wheat | nucleus, plastid | 23.19 | 30.19 |
TraesCS3D01G235000.1 | Wheat | cytosol, nucleus, plastid | 8.53 | 27.78 |
AT5G63320.1 | Thale cress | nucleus | 39.83 | 26.39 |
TraesCS2D01G466700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 17.64 | 26.38 |
TraesCS3D01G234900.1 | Wheat | cytosol, nucleus, plastid | 8.11 | 25.68 |
CDY48139 | Canola | nucleus | 30.73 | 24.43 |
TraesCS3D01G146600.1 | Wheat | nucleus, plastid | 16.5 | 22.92 |
CDY16729 | Canola | nucleus | 32.86 | 20.23 |
TraesCS7D01G074500.1 | Wheat | cytosol | 9.96 | 19.94 |
Bra035848.1-P | Field mustard | nucleus | 32.86 | 19.4 |
TraesCS1D01G373000.1 | Wheat | cytosol | 9.82 | 19.22 |
TraesCS6D01G177700.1 | Wheat | cytosol, plastid | 17.21 | 19.06 |
Protein Annotations
Gene3D:1.20.1270.220 | Gene3D:1.20.920.10 | MapMan:15.5.54 | InterPro:Bromodomain | InterPro:Bromodomain-like_sf | ncoils:Coil |
GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GTE_bromo | InterPro:IPR001487 | InterPro:IPR027353 |
InterPro:IPR036427 | InterPro:IPR038336 | InterPro:NET_dom | InterPro:NET_sf | PFAM:PF00439 | PFAM:PF17035 |
PRINTS:PR00503 | PFscan:PS50014 | PFscan:PS51525 | PANTHER:PTHR22880 | PANTHER:PTHR22880:SF231 | SMART:SM00297 |
SUPFAM:SSF47370 | EnsemblPlantsGene:TraesCS6D01G196600 | EnsemblPlants:TraesCS6D01G196600.3 | TIGR:cd05506 | SEG:seg | : |
Description
No Description!
Coordinates
chr6D:-:272858712..272862704
Molecular Weight (calculated)
78029.9 Da
IEP (calculated)
4.996
GRAVY (calculated)
-0.761
Length
703 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPTVLMEFA PQRQIKRSYD EMAYRGVPRG YAETVGESGS PVRVDSQDSS GPKRKCISLN SDGFGVKREI FVPSKMSSSE RRYLRQRFRS ELDSVRDLLK
101: KPEFLAIMPV SRAPAYSSSA APRAKKVKAG SHVLRGAKGR FLPTKPRPET SMVLPEATIL QMCEGILKKL MTQKCSHIFN VPVDVEKLNI PDYNDIIKHP
201: MDLGTIKKKL DSGSYTRPSD FAADVRLTFS NAITYNPRGH AVHDMAIQLN KMFESRWKTV EKKLASAATK PHVEVDRADS KRRKTPPVDR SDLSIERVRP
301: TEIMKPKMTF EEKESFGNCL ASLSEEPELL PGHIIDLLQQ CIDNNTDQPG DGEIEIDIHA LSDDILLELK KRVDKYLQER DNQQKKSEPS ENEAVNVPGL
401: SHLSTNPCKG GEPIEEDVDI CGNASPILIE KDPQIRTNKC GSPSSSSSDS GSSSSDSDSG SDTESESEKV GSPAKLAKVT KIPEQPAEQE KSDVINPVDA
501: NHTAGDVELR EQDNESKAAS EGENAKPDRQ VSPDKLLRAA LLRSRYADVI VKARGILSQG EGGDKQEELE KLQKEEKERL LAEGNAAMEA RRAEAEAESK
601: CKRDLEREKA RQALQEMERT VEINDSVHPK DLEMLGTITT EHIVSSVDET SPEHSQDGMP SFLPGSGSML EKLGLFMKVD EEEEEDEPCS FPSSKDVEEV
701: EID
101: KPEFLAIMPV SRAPAYSSSA APRAKKVKAG SHVLRGAKGR FLPTKPRPET SMVLPEATIL QMCEGILKKL MTQKCSHIFN VPVDVEKLNI PDYNDIIKHP
201: MDLGTIKKKL DSGSYTRPSD FAADVRLTFS NAITYNPRGH AVHDMAIQLN KMFESRWKTV EKKLASAATK PHVEVDRADS KRRKTPPVDR SDLSIERVRP
301: TEIMKPKMTF EEKESFGNCL ASLSEEPELL PGHIIDLLQQ CIDNNTDQPG DGEIEIDIHA LSDDILLELK KRVDKYLQER DNQQKKSEPS ENEAVNVPGL
401: SHLSTNPCKG GEPIEEDVDI CGNASPILIE KDPQIRTNKC GSPSSSSSDS GSSSSDSDSG SDTESESEKV GSPAKLAKVT KIPEQPAEQE KSDVINPVDA
501: NHTAGDVELR EQDNESKAAS EGENAKPDRQ VSPDKLLRAA LLRSRYADVI VKARGILSQG EGGDKQEELE KLQKEEKERL LAEGNAAMEA RRAEAEAESK
601: CKRDLEREKA RQALQEMERT VEINDSVHPK DLEMLGTITT EHIVSSVDET SPEHSQDGMP SFLPGSGSML EKLGLFMKVD EEEEEDEPCS FPSSKDVEEV
701: EID
001: MVESAAFPGG YYRNTFEAPE ESEGSGSSAQ IDTEVTASEN SSTPARKCIM LNSNDEDPYG VQRQVISLYN MSQSERKDLI YRLKLELEQT KIVLKNAELQ
101: RMNPAAVSST SDRVGFSTGQ KISSRVSNSK KPSDFAVGSG KKVRHQNGTS RGWNRGTSGK FESSKETMTS TPNITLMKQC DTLLRKLWSH PHSWVFQAPV
201: DVVKLNIPDY LTTIKHPMDL GTVKKNLASG VYSSPHEFAA DVRLTFTNAM TYNPPGHDVH IMGDILSKLF EARWKTIKKK LPPCSMQTLP AVTLEPNDER
301: KAAISVPPAK KRKMASPVRE SVPEPVKPLM TEVERHRLGR QLESLLDELP AHIIDFLKKH NSNGGEIAED EIEIDIDVLS DEVLVTLRNL LDEYIQNKEA
401: KQTNVEPCEI ELINGSRPSN SSLQRGNEMA DEYVDGNEPP ISRSSSDSDS GSSEDQSDDA KPMVQGDSSK MPETANSEAQ RDENTRIDDL FVGSQSTGAL
501: EQMDICSQQK LSSDESDGQH EGNILETPAS SEKRYRAALL KNRFADIILK AREKPLPQNG IKGDPERLRK EREELVLQKK KEKARLQAEA EAAEDARRQA
601: EAEAAAEAAA EAKRKRELER EAARQALLKM EKTVEINENS RFLEDLEMLS SSAPEQLPSS AEETSPERPL DALGSFNLRG SNPLEQLGLY MKQDDDEEEP
701: EAPAVPKPDE TSTERPLDAL GSFKLGECNP LEQLGLYMKQ DDGEEEEPEA PVVPKPNETS LERPVDAFGS FNLKGSNPLE QLGLYMKQDD DEEEPEAPAV
801: PNLANDVEEG EID
101: RMNPAAVSST SDRVGFSTGQ KISSRVSNSK KPSDFAVGSG KKVRHQNGTS RGWNRGTSGK FESSKETMTS TPNITLMKQC DTLLRKLWSH PHSWVFQAPV
201: DVVKLNIPDY LTTIKHPMDL GTVKKNLASG VYSSPHEFAA DVRLTFTNAM TYNPPGHDVH IMGDILSKLF EARWKTIKKK LPPCSMQTLP AVTLEPNDER
301: KAAISVPPAK KRKMASPVRE SVPEPVKPLM TEVERHRLGR QLESLLDELP AHIIDFLKKH NSNGGEIAED EIEIDIDVLS DEVLVTLRNL LDEYIQNKEA
401: KQTNVEPCEI ELINGSRPSN SSLQRGNEMA DEYVDGNEPP ISRSSSDSDS GSSEDQSDDA KPMVQGDSSK MPETANSEAQ RDENTRIDDL FVGSQSTGAL
501: EQMDICSQQK LSSDESDGQH EGNILETPAS SEKRYRAALL KNRFADIILK AREKPLPQNG IKGDPERLRK EREELVLQKK KEKARLQAEA EAAEDARRQA
601: EAEAAAEAAA EAKRKRELER EAARQALLKM EKTVEINENS RFLEDLEMLS SSAPEQLPSS AEETSPERPL DALGSFNLRG SNPLEQLGLY MKQDDDEEEP
701: EAPAVPKPDE TSTERPLDAL GSFKLGECNP LEQLGLYMKQ DDGEEEEPEA PVVPKPNETS LERPVDAFGS FNLKGSNPLE QLGLYMKQDD DEEEPEAPAV
801: PNLANDVEEG EID
Arabidopsis Description
GTE8Global transcription factor group E8 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS77]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.