Factsheet for HORVU6Hr1G054560.16

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G083410.1
HORVU2Hr1G083430.3
HORVU2Hr1G083490.1
HORVU3Hr1G092090.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01770.1	HORVU2Hr1G083410.1	AT3G48360.1	15316289
AT3G01770.1	HORVU2Hr1G083430.3	AT3G48360.1	15316289
AT3G01770.1	HORVU2Hr1G083490.1	AT3G48360.1	15316289
AT3G01770.1	HORVU3Hr1G092090.3	AT3G48360.1	15316289
AT3G01770.1	HORVU2Hr1G083410.1	AT5G63160.1	15316289
AT3G01770.1	HORVU2Hr1G083430.3	AT5G63160.1	15316289
AT3G01770.1	HORVU2Hr1G083490.1	AT5G63160.1	15316289
AT3G01770.1	HORVU3Hr1G092090.3	AT5G63160.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G196600.3	Wheat	nucleus	91.89	93.46
TraesCS6B01G244000.2	Wheat	plastid	93.99	93.33
TraesCS6A01G214000.1	Wheat	nucleus	91.89	93.06
HORVU3Hr1G015760.1	Barley	nucleus	65.17	84.42
HORVU3Hr1G022660.1	Barley	nucleus	83.5	83.85
Os02t0601800-03	Rice	nucleus	80.28	80.39
EES07108	Sorghum	nucleus	76.36	76.79
Zm00001d017126_P001	Maize	nucleus	73.99	76.01
VIT_17s0000g01830.t01	Wine grape	nucleus	45.59	43.18
GSMUA_Achr8P01140_001	Banana	nucleus	44.76	42.61
GSMUA_Achr8P08920_001	Banana	nucleus	38.6	42.46
VIT_14s0171g00380.t01	Wine grape	nucleus	42.94	41.66
Bra025262.1-P	Field mustard	nucleus	31.19	41.22
Bra038624.1-P	Field mustard	nucleus	13.85	40.91
KRH63729	Soybean	nucleus	44.62	40.74
KRH07021	Soybean	nucleus	42.24	40.59
GSMUA_Achr10P...	Banana	nucleus	35.94	40.28
KRH54219	Soybean	nucleus	44.06	39.97
KRG94435	Soybean	nucleus	41.4	39.89
Bra039088.1-P	Field mustard	nucleus	36.22	39.78
CDY20057	Canola	nucleus	35.8	39.69
GSMUA_Achr2P20970_001	Banana	nucleus	39.58	39.31
KRH57199	Soybean	nucleus	40.56	39.24
Solyc03g111090.2.1	Tomato	nucleus	42.52	38.92
PGSC0003DMT400039290	Potato	nucleus	42.24	38.42
PGSC0003DMT400052108	Potato	nucleus	39.16	38.41
Solyc02g093880.2.1	Tomato	nucleus	38.04	37.52
GSMUA_Achr3P02660_001	Banana	plasma membrane	34.27	37.46
AT3G01770.1	Thale cress	nucleus	32.17	37.1
CDY13699	Canola	nucleus	23.36	36.54
AT5G14270.2	Thale cress	nucleus	34.97	36.28
KRH07022	Soybean	nucleus	39.44	35.88
HORVU7Hr1G074620.7	Barley	cytosol, mitochondrion, nucleus	37.76	34.66
GSMUA_Achr3P02670_001	Banana	nucleus	33.99	34.47
CDX83673	Canola	nucleus	23.36	33.53
AT3G27260.3	Thale cress	nucleus	37.76	32.85
CDX84396	Canola	nucleus	27.83	32.46
HORVU4Hr1G055510.6	Barley	cytosol, nucleus, plastid	8.95	28.07
AT5G63320.1	Thale cress	nucleus	38.88	26.2
CDY48139	Canola	nucleus	30.07	24.32
HORVU7Hr1G118300.1	Barley	cytosol	22.94	23.03
HORVU5Hr1G097840.6	Barley	cytosol	10.21	20.86
HORVU7Hr1G018300.6	Barley	cytosol	9.93	20.17
CDY16729	Canola	nucleus	31.89	19.96
HORVU6Hr1G045030.1	Barley	nucleus	17.2	19.43
HORVU6Hr1G045070.4	Barley	nucleus	17.2	19.34
Bra035848.1-P	Field mustard	nucleus	31.89	19.14

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	UniProt:A0A287U8D7	InterPro:Bromodomain	InterPro:Bromodomain-like_sf
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GTE_bromo	EnsemblPlantsGene:HORVU6Hr1G054560
EnsemblPlants:HORVU6Hr1G054560.16	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	InterPro:NET_dom
InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525
PANTHER:PTHR22880	PANTHER:PTHR22880:SF231	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI000B47024A	SEG:seg

Description

No Description!

Coordinates

chrchr6H:+:345277981..345282107

Molecular Weight (calculated)

79240.6 Da

IEP (calculated)

5.107

GRAVY (calculated)

-0.707

Length

715 amino acids

Sequence
(BLAST)

001: MPLFVVIQQI CATSLAPGNM TPTVLMEFAP QRQIKRGYDE MAYRGVPRGY AETVDESGSP VRVDSQDSSA PKRKCISLNS DGFGVKREIF VPSKMSSSER
101: RYLRKRFRSE LDSVRDLLKK PEFLAILPVS RAPAYSSSAA PRPKKVQRGS HVVRGAKGRF LPTKPRPEMS IVLPEATILK MCEGILKKLM TQKCSHIFNV
201: PVDVEKLNIP DYNDIIKHPM DLGTIKKKLD SGSYTRPSDF AADVRLTFNN AITYNPRGHA VHDMAIQLNK MFESRWKTVE KKLACAATKP HVEVDRADSK
301: RRKTPPVDCG DLSVERVRPT EIMKPKMTFE EKESFGNCLA SLSEEPELLP GHIIDLLQQC IDNNADQPGD GEIEIDIHAL SDDILLELKK HVDKYLQERD
401: NQQTKSEPSE NEAVNVPGLS HLSTNPCKGG EPVEEDVDIC GNASPILIEK DPQIRTNKCG SPSSSSSDSG SSSSDSDSGS DTESESEKVG SPPPVIKVPE
501: QPAEQEKSDV INPVDVNHTA GDVELREQDN ESKAAPEGEN AKSGRQVSPD KLLRAALLRS RYADVIVKAR GILSQGEGGD KQEELEKLQK EEKERLLAEG
601: NAAMEARRAE AEAESKRKRD LEREKARQAL QEMERTVEIN DSVHPRDLEM LGTVTTEHIV SSVDETSPDH SQDGMPSFLP GSGNMLEKLG LFMKVDEEED
701: EDEPCSVPRS KVAEE

Best Arabidopsis Sequence Match ( AT3G27260.1 )
(BLAST)

001: MVESAAFPGG YYRNTFEAPE ESEGSGSSAQ IDTEVTASEN SSTPARKCIM LNSNDEDPYG VQRQVISLYN MSQSERKDLI YRLKLELEQT KIVLKNAELQ
101: RMNPAAVSST SDRVGFSTGQ KISSRVSNSK KPSDFAVGSG KKVRHQNGTS RGWNRGTSGK FESSKETMTS TPNITLMKQC DTLLRKLWSH PHSWVFQAPV
201: DVVKLNIPDY LTTIKHPMDL GTVKKNLASG VYSSPHEFAA DVRLTFTNAM TYNPPGHDVH IMGDILSKLF EARWKTIKKK LPPCSMQTLP AVTLEPNDER
301: KAAISVPPAK KRKMASPVRE SVPEPVKPLM TEVERHRLGR QLESLLDELP AHIIDFLKKH NSNGGEIAED EIEIDIDVLS DEVLVTLRNL LDEYIQNKEA
401: KQTNVEPCEI ELINGSRPSN SSLQRGNEMA DEYVDGNEPP ISRSSSDSDS GSSEDQSDDA KPMVQGDSSK MPETANSEAQ RDENTRIDDL FVGSQSTGAL
501: EQMDICSQQK LSSDESDGQH EGNILETPAS SEKRYRAALL KNRFADIILK AREKPLPQNG IKGDPERLRK EREELVLQKK KEKARLQAEA EAAEDARRQA
601: EAEAAAEAAA EAKRKRELER EAARQALLKM EKTVEINENS RFLEDLEMLS SSAPEQLPSS AEETSPERPL DALGSFNLRG SNPLEQLGLY MKQDDDEEEP
701: EAPAVPKPDE TSTERPLDAL GSFKLGECNP LEQLGLYMKQ DDGEEEEPEA PVVPKPNETS LERPVDAFGS FNLKGSNPLE QLGLYMKQDD DEEEPEAPAV
801: PNLANDVEEG EID

Arabidopsis Description

GTE8Global transcription factor group E8 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.