Factsheet for GSMUA_Achr2P20970_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr6P12110_001
GSMUA_Achr6P12420_001
GSMUA_Achr9P02050_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01770.1	GSMUA_Achr11P...	AT3G48360.1	15316289
AT3G01770.1	GSMUA_Achr6P12110_001	AT3G48360.1	15316289
AT3G01770.1	GSMUA_Achr6P12420_001	AT3G48360.1	15316289
AT3G01770.1	GSMUA_Achr9P02050_001	AT3G48360.1	15316289
AT3G01770.1	GSMUA_AchrUn_...	AT3G48360.1	15316289
AT3G01770.1	GSMUA_AchrUn_...	AT3G48360.1	15316289
AT3G01770.1	GSMUA_Achr11P...	AT5G63160.1	15316289
AT3G01770.1	GSMUA_Achr6P12110_001	AT5G63160.1	15316289
AT3G01770.1	GSMUA_Achr6P12420_001	AT5G63160.1	15316289
AT3G01770.1	GSMUA_Achr9P02050_001	AT5G63160.1	15316289
AT3G01770.1	GSMUA_AchrUn_...	AT5G63160.1	15316289
AT3G01770.1	GSMUA_AchrUn_...	AT5G63160.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	57.22	64.58
GSMUA_Achr3P02660_001	Banana	plasma membrane	50.14	55.2
GSMUA_Achr8P01140_001	Banana	nucleus	52.22	50.07
GSMUA_Achr8P08920_001	Banana	nucleus	44.72	49.54
GSMUA_Achr3P02670_001	Banana	nucleus	47.78	48.79
VIT_17s0000g01830.t01	Wine grape	nucleus	50.83	48.48
Bra025262.1-P	Field mustard	nucleus	34.58	46.03
VIT_14s0171g00380.t01	Wine grape	nucleus	46.94	45.86
KRH07021	Soybean	nucleus	47.36	45.83
KRG94435	Soybean	nucleus	46.81	45.42
KRH57199	Soybean	nucleus	46.11	44.93
KRH54219	Soybean	nucleus	49.03	44.8
KRH63729	Soybean	nucleus	48.47	44.57
AT3G01770.1	Thale cress	nucleus	38.19	44.35
Solyc02g093880.2.1	Tomato	nucleus	44.03	43.72
CDY20057	Canola	nucleus	39.17	43.72
PGSC0003DMT400052108	Potato	nucleus	44.17	43.62
Solyc03g111090.2.1	Tomato	nucleus	46.94	43.28
Bra039088.1-P	Field mustard	nucleus	38.89	43.01
PGSC0003DMT400039290	Potato	nucleus	46.81	42.88
AT5G14270.2	Thale cress	nucleus	40.28	42.09
CDY13699	Canola	nucleus	26.67	42.01
TraesCS6D01G196600.3	Wheat	nucleus	39.58	40.54
Bra038624.1-P	Field mustard	nucleus	13.61	40.5
KRH07022	Soybean	nucleus	44.17	40.46
TraesCS3A01G087800.1	Wheat	plastid	34.17	40.33
Os02t0601800-03	Rice	nucleus	39.86	40.2
TraesCS6A01G214000.1	Wheat	nucleus	39.31	40.09
TraesCS3D01G087900.4	Wheat	nucleus	39.72	39.94
TraesCS7D01G309100.1	Wheat	nucleus	41.39	39.73
TraesCS6B01G244000.2	Wheat	plastid	39.58	39.58
HORVU6Hr1G054560.16	Barley	nucleus	39.31	39.58
CDX83673	Canola	nucleus	27.36	39.56
TraesCS7A01G312700.2	Wheat	nucleus	41.11	39.47
TraesCS3B01G103200.2	Wheat	nucleus	38.89	39.16
TraesCS3B01G141400.2	Wheat	nucleus, plastid	38.75	39.13
TraesCS7B01G212400.2	Wheat	nucleus	40.69	39.07
TraesCS3A01G122200.1	Wheat	nucleus	38.47	38.85
Zm00001d035167_P001	Maize	nucleus	40.83	38.79
TraesCS3D01G124100.1	Wheat	nucleus	38.33	38.71
KXG24325	Sorghum	nucleus	37.5	38.14
EES07108	Sorghum	nucleus	37.5	37.97
HORVU3Hr1G022660.1	Barley	nucleus	37.5	37.92
HORVU7Hr1G074620.7	Barley	cytosol, mitochondrion, nucleus	40.83	37.74
Zm00001d017126_P001	Maize	nucleus	36.39	37.64
Zm00001d049638_P009	Maize	nucleus	39.31	36.42
AT3G27260.3	Thale cress	nucleus	41.39	36.25
HORVU3Hr1G015760.1	Barley	nucleus	26.39	34.42
CDX84396	Canola	nucleus	29.03	34.09
GSMUA_Achr10P...	Banana	nucleus, plastid	16.94	27.29
AT5G63320.1	Thale cress	nucleus	40.14	27.24
CDY48139	Canola	nucleus	31.81	25.91
GSMUA_Achr11P...	Banana	nucleus	15.14	25.77
GSMUA_Achr4P27780_001	Banana	nucleus	23.61	25.22
GSMUA_Achr1P15650_001	Banana	nucleus	16.39	23.98
GSMUA_Achr3P00480_001	Banana	nucleus	17.36	23.95
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	16.67	23.35
GSMUA_Achr1P11660_001	Banana	nucleus	16.39	23.0
CDY16729	Canola	nucleus	33.33	21.02
Bra035848.1-P	Field mustard	nucleus	33.33	20.15
GSMUA_Achr8P29340_001	Banana	nucleus	9.72	17.9
GSMUA_Achr8P34430_001	Banana	nucleus	8.89	14.88

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr2G20970_001	EnsemblPlants:GSMUA_Achr2P20970_001	EnsemblPlants:GSMUA_Achr2T20970_001
InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M0S9T8
InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014
PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF228	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI000295E37B
SEG:seg	:	:	:	:	:

Description

Putative bromodomain domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G20970_001]

Coordinates

chr2:+:20649730..20658706

Molecular Weight (calculated)

80443.5 Da

IEP (calculated)

5.646

GRAVY (calculated)

-0.743

Length

720 amino acids

Sequence
(BLAST)

001: MAPTVLLEYT KEKQMKRSSH DLSFATKGRK QKLSQGYRSG SINDYQHNSE KINESEGFGI AIRADSSDNS SAPKRKKCVN ANVARCNDFG VPVQVISLSK
101: MSGSQREEVK MRLRSELGQI QLFQKQLFSR SVTSLGISTS SSFNVSEKKH DQRSGSQMKR GISGRFESSK TDAPPPPVTD SNLVLMKECE VLLSRLMTHH
201: YAWVFNEPVD VEKLNIPDYY TVIKHPMDFG TISTKLSSDA YPSPQGFAAD VRLTFTNAMT YNPPSNSVHI MANKLSKFFE TRWKTIEKKL AAADAVIKKE
301: FQVVKPEFSS SKRKMPPTDD NNPVPKRTKP KMTDEEKQSL TRLLESLLAD LPDHIIDFLR RQSGNVNQSS DEIEIDIESF ADDTLFELQN LLDSHMQERE
401: MRHQAEQVNE NGVSTSQLHP CKGNDLADEE VDICGDDPPM SSYPTLEIQM DTKATNVNCS SSSNSSSDSG SSSETVGLKG KKIRVFLVAL NSPITSNYWQ
501: LAGPSNGLNF SEKDADPKPL LVGSDECQEG DHTPSERKVS PEKLYRAALL RSRFADTIVK AREKTLGQCD KGDPEKLQRE REEIERQQRE EKARLQAEAK
601: AAEDARKRAE AAAAAEAKRK IELEREAARQ ALLKASTCIE KTVDINEDCR ILKDLEMLGT VPAENEKHTG YSLDGIGGFR LGGSNPLERL GLFMKVDDEE
701: EEEVEHKSAP VNDVEEGEID

Best Arabidopsis Sequence Match ( AT5G14270.2 )
(BLAST)

001: MTERNGGFPG DYCFEAPGGD YDEGSDSPRV SEGSNCSKRK VGETFGVSKM VLPLSGLSSS DRKELIRRLR QELEQIRVFQ KNFELSRTVA LTSSSASGLT
101: RVKSFGMSRC STGPGKTVNP ISAASKPTPV TTAVMLLMKQ CEALLKRLMS HQYGWVFNTP VDVVKLNILD YFNVIEHPMD LGTVKNKLTS GTYSCPSEFA
201: ADVRLTFSNA MTYNPPGNDV YVMADTLRKF FEVRWKTLEK KLSGTKVHTE PSNLDAHKEK HIVIPVPMAK KRKTTAVDCE NVVDPAKRVM TDEDRLKLGK
301: DLESLTEFPA QLINFLRDHN SNEGGIGDDE IEIDINDLSD HALFQLRDLL DEHLREIQNK KSSVEPCEIE LLHGSVPGNS SMQHCDGSEL DDEVVDIGEN
401: EHPTSSISPV TIEKDLVLGN SNGNSLGSVS GDPKMSSLPR ASKGLGTIDL EPMLDGATSA SPTRGLASVG GLDQLESASP EKISSVEADC QQDGNSAQNE
501: KQLPPEKSYR AAILKNRFAD IILKAREKPL NQNDTRDPEK LQREREELEL QKKKEKARLQ AEAKAAEEAR RKAEAQAAAE AAAEAKRKLE LEREAARQAL
601: MEMEQSVELN ENAKFLEDLE LLKTVDTDHL TNTIEEEDGP DVGLRSFSFG GSNPLEQLGL FMKQDEDEEE ADPLTSPAPE IDIEEGEID

Arabidopsis Description

BET9Bromodomain and extraterminal domain protein 9 [Source:UniProtKB/TrEMBL;Acc:F4K6Q7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.