Factsheet for GSMUA_Achr4P27780_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g02240.t01	Wine grape	nucleus	34.72	40.84
KRH11112	Soybean	nucleus	31.45	37.52
KRH21136	Soybean	nucleus	30.86	36.75
Solyc02g071510.2.1	Tomato	nucleus	28.78	33.05
EER97261	Sorghum	nucleus	23.74	32.85
PGSC0003DMT400018643	Potato	nucleus	28.49	31.68
TraesCS7D01G526000.1	Wheat	nucleus, plastid	24.63	30.74
Bra022044.1-P	Field mustard	nucleus	23.74	30.48
TraesCS7B01G461100.3	Wheat	nucleus, plastid	24.63	30.35
TraesCS7A01G539800.2	Wheat	nucleus, plastid	24.63	30.24
Os07t0507700-01	Rice	nucleus	25.96	29.12
Zm00001d004790_P008	Maize	nucleus	24.78	28.89
AT5G46550.1	Thale cress	cytosol	20.92	28.54
EES09393	Sorghum	nucleus	25.52	28.43
HORVU4Hr1G055510.6	Barley	cytosol, nucleus, plastid	9.35	27.63
CDY43984	Canola	endoplasmic reticulum	17.8	27.46
Zm00001d053022_P001	Maize	nucleus	24.93	27.41
GSMUA_Achr8P01140_001	Banana	nucleus	26.41	23.7
GSMUA_Achr2P20970_001	Banana	nucleus	25.22	23.61
GSMUA_Achr3P02660_001	Banana	plasma membrane	22.7	23.39
HORVU7Hr1G118300.1	Barley	cytosol	24.48	23.17
GSMUA_Achr10P...	Banana	nucleus	21.66	22.88
GSMUA_Achr8P08920_001	Banana	nucleus	21.22	22.0
GSMUA_Achr10P...	Banana	nucleus, plastid	13.06	19.69
GSMUA_Achr3P02670_001	Banana	nucleus	20.33	19.43
GSMUA_Achr8P29340_001	Banana	nucleus	10.24	17.65
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	13.06	17.12
GSMUA_Achr11P...	Banana	nucleus	10.68	17.02
EES09391	Sorghum	cytosol, mitochondrion, nucleus	10.83	16.78
GSMUA_Achr1P11660_001	Banana	nucleus	11.72	15.4
GSMUA_Achr3P00480_001	Banana	nucleus	10.83	13.98
GSMUA_Achr8P34430_001	Banana	nucleus	8.9	13.95
GSMUA_Achr1P15650_001	Banana	nucleus	9.94	13.62

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr4G27780_001	EnsemblPlants:GSMUA_Achr4P27780_001	EnsemblPlants:GSMUA_Achr4T27780_001
InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M0SSP0
InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014
PANTHER:PTHR22880	PANTHER:PTHR22880:SF153	SMART:SM00297	SUPFAM:SSF47370	SignalP:SignalP-noTM	UniParc:UPI0002961A4F
SEG:seg	:	:	:	:	:

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G27780_001]

Coordinates

chr4:-:26484125..26489607

Molecular Weight (calculated)

75407.9 Da

IEP (calculated)

6.954

GRAVY (calculated)

-0.598

Length

674 amino acids

Sequence
(BLAST)

001: MIIHLFAFGL ISADTEAASA DQTHRYVAEK LALKKKLKTE LDHVRSAVEN IIADCERRLG QKHSAAEEDQ AVILGNDCAG EVVASIHSFC IPEQQPSLTG
101: ENYQTTMSKR KIALEMNTNP KDADNYSNDG IDMIPDKSDA KSVLTGPSKG STLGTSDALK VKGEKMDSFK TRQCANILKI LMIHPAGWVF KEPVDPVKLK
201: IPDYFSIISK PMDLGTIKRK LGRKQYSSTV QFAADVRLTF SNAMRYNPPE NEVHVMAKEL NNIFNSRWKL LEAEWRNKST LSSQSVTNTQ KKKRLLEKRP
301: DPNSVLRRFI PSAEKLKLKK ELSNLPVRKM PPRLLSFLQS KGIVGQIGEF VGIDIDMFDE ETLWELHQLV RNFIDGTPIE IKKCTRRPEQ DSHKGPGETV
401: LQSDVIDEFV SPLARMKSAH RTVSCQRSHC NDSSQASSSE VDSGRSSRSE HYSRRSTANS LDWEKTPTGF GLQSNDSIQS ISHPPSPLTA ATEDLGPCEE
501: QLSPSKALRA AMLKSRFADT ILKAQQQSLG VKIDPAKLQR EREKLEKRQR EEKARIEAQV KAAEIAAKMK AEAELTRQRE AARLALQKME KTVEIDNSHI
601: LKDLENLGCP LPGHFDMTDE TVGKFMQELE MHSGLVNPLE QLGLFMKNED LDEVDEWISS AGNGDVEEGE IDGS

Best Arabidopsis Sequence Match ( AT3G01770.1 )
(BLAST)

001: MTVRNGGFPG DYNRNSFDSP GGCDDSPNAS KDDETFGVPR IVLPLSDLSS SERRKWIHTL RQELEQLRSF QKSVGDLLPI SKIVTSTPAS NVSRPKSFGM
101: SRCSTGPGKR VLPFTATKPE PVTTSTMLRM KQCESLLKRL MSQQHCWLFN TPVDVVKLNI PDYFTIIKHP MDLGTVKSKL TSGTYSSPSE FSADVRLTFR
201: NAMTYNPSDN NVYRFADTLS KFFEVRWKTI EKKSSGTKSE PSNLATLAHK DIAIPEPVAK KRKMNAVKRN SLLEPAKRVM TDEDRVKLGR DLGSLTEFPV
301: QIINFLRDHS SKEERSGDDE IEIDINDLSH DALFQLRDLF DEFLRENQKK DSNGEPCVLE LLHGSGPGNS LTQHCDGSEL EDEDVDIGNY EHPISHISTV
401: RTEKDSVGGL NQMEDASRGK LSLIEGADGH QDGNSAPKEK ELPPEKRYRA ALLKNRFADI ILKAQEITLN QNEKRDPETL QREKEELELQ KKKEKARLQA
501: EAKEAEEARR KAEAQEAKRK LELEREAARQ ALLEMEKSVE INENTRFLKD LELLKTVNTD QLRNLRDVGS ESDGLAVFGF GGSNPLEQLG LFMKHEEDED
601: ESDMLAFPDP GNEVEEGEID

Arabidopsis Description

GTE11Transcription factor GTE11 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZB7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.