Factsheet for VIT_10s0003g02240.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
plasma membrane 1
cytosol 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11112	Soybean	nucleus	46.77	47.43
KRH21136	Soybean	nucleus	45.55	46.11
GSMUA_Achr4P27780_001	Banana	nucleus	40.84	34.72
Solyc02g071510.2.1	Tomato	nucleus	35.08	34.24
PGSC0003DMT400018643	Potato	nucleus	34.9	33.0
AT5G46550.1	Thale cress	cytosol	27.4	31.78
EER97261	Sorghum	nucleus	26.53	31.21
Bra022044.1-P	Field mustard	nucleus	27.75	30.29
TraesCS7B01G461100.3	Wheat	nucleus, plastid	27.23	28.52
TraesCS7D01G526000.1	Wheat	nucleus, plastid	26.88	28.52
TraesCS7A01G539800.2	Wheat	nucleus, plastid	27.05	28.23
CDY43984	Canola	endoplasmic reticulum	21.12	27.69
Zm00001d004790_P008	Maize	nucleus	27.23	26.99
Os07t0507700-01	Rice	nucleus	27.75	26.46
EES09393	Sorghum	nucleus	27.75	26.28
VIT_17s0000g01830.t01	Wine grape	nucleus	33.68	25.56
Zm00001d053022_P001	Maize	nucleus	26.7	24.96
HORVU4Hr1G055510.6	Barley	cytosol, nucleus, plastid	9.77	24.56
VIT_14s0171g00380.t01	Wine grape	nucleus	30.72	23.88
HORVU7Hr1G118300.1	Barley	cytosol	26.7	21.49
VIT_13s0019g03950.t01	Wine grape	nucleus	11.52	17.1
VIT_03s0097g00570.t01	Wine grape	nucleus	16.23	16.85
EES09391	Sorghum	cytosol, mitochondrion, nucleus	12.57	16.55
VIT_19s0014g01650.t01	Wine grape	nucleus	15.88	15.24
VIT_12s0028g02510.t01	Wine grape	nucleus	16.58	14.53

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:100264084	wikigene:100264084	MapMan:15.5.54	EMBL:AM477775
InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ProteinID:CAN72911	ProteinID:CAN72911.1	ProteinID:CBI30776	ProteinID:CBI30776.3
ncoils:Coil	UniProt:D7TJV4	EMBL:FN595992	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR036427	InterPro:IPR038336	EntrezGene:LOC100264084	wikigene:LOC100264084
InterPro:NET_sf	PFAM:PF00439	PRINTS:PR00503	PFscan:PS50014	PANTHER:PTHR22880	PANTHER:PTHR22880:SF153
SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0001BE38FA	ArrayExpress:VIT_10s0003g02240	EnsemblPlantsGene:VIT_10s0003g02240	EnsemblPlants:VIT_10s0003g02240.t01
RefSeq:XP_002269681	RefSeq:XP_002269681.2	RefSeq:XP_010655611.1	RefSeq:XP_019078217.1	SEG:seg	:

Description

No Description!

Coordinates

chr10:+:4018577..4023590

Molecular Weight (calculated)

64377.9 Da

IEP (calculated)

9.443

GRAVY (calculated)

-0.706

Length

573 amino acids

Sequence
(BLAST)

001: MDAIGKILPN RKLKIKFAAK KVEAEPVTLS CTKKRGTPGI TDVPKAKRQK MDRSTTLQCT SILKKLMTHP AGWVFNQPVD PVALNIPDYF SIISKPMDLG
101: TIKSKLEKNM YLATEEFAAD VRLTFANAML YNPPSNNVHQ MAKKLNDLFN TRWKTVDTNW SESSKVDPGK ILSGGRGKTI NSSRQKCSTT PSLHANSMSF
201: EDKQKLRKEL MEVSRGKMPP YLGGFLRRHG MTCQNIETME VNIDKFDEET LLELRRVMKI SCDARTEKVE CTKTAENCRT KSSGKDLDKG TDRNNAHACG
301: SGNTKLPLSL QNDSNNGSSS DLSTERSFVK DYRACSSDAS EPNCQVKNTI SRISKSDPDS DGAVSAVDDE NICTSSHPMT PTTAAAPGEG WITPIFDVQL
401: SPKKALRAAM LKSRFADTIL KAQQKTLLDH GNKADRVKMQ QKKERLEKKQ LEEKGRLEAQ VRAAEAASRM KAETESKLQR EKEREAARVA LQKMARTVEF
501: ENNVQIVKEL EKLSGCVLTY QYYRQRDSKV QLRAFNFGNP LERLGLYIKD DFFVDEDEKI ILNEDGEEGE ILY

Best Arabidopsis Sequence Match ( AT5G14270.2 )
(BLAST)

001: MTERNGGFPG DYCFEAPGGD YDEGSDSPRV SEGSNCSKRK VGETFGVSKM VLPLSGLSSS DRKELIRRLR QELEQIRVFQ KNFELSRTVA LTSSSASGLT
101: RVKSFGMSRC STGPGKTVNP ISAASKPTPV TTAVMLLMKQ CEALLKRLMS HQYGWVFNTP VDVVKLNILD YFNVIEHPMD LGTVKNKLTS GTYSCPSEFA
201: ADVRLTFSNA MTYNPPGNDV YVMADTLRKF FEVRWKTLEK KLSGTKVHTE PSNLDAHKEK HIVIPVPMAK KRKTTAVDCE NVVDPAKRVM TDEDRLKLGK
301: DLESLTEFPA QLINFLRDHN SNEGGIGDDE IEIDINDLSD HALFQLRDLL DEHLREIQNK KSSVEPCEIE LLHGSVPGNS SMQHCDGSEL DDEVVDIGEN
401: EHPTSSISPV TIEKDLVLGN SNGNSLGSVS GDPKMSSLPR ASKGLGTIDL EPMLDGATSA SPTRGLASVG GLDQLESASP EKISSVEADC QQDGNSAQNE
501: KQLPPEKSYR AAILKNRFAD IILKAREKPL NQNDTRDPEK LQREREELEL QKKKEKARLQ AEAKAAEEAR RKAEAQAAAE AAAEAKRKLE LEREAARQAL
601: MEMEQSVELN ENAKFLEDLE LLKTVDTDHL TNTIEEEDGP DVGLRSFSFG GSNPLEQLGL FMKQDEDEEE ADPLTSPAPE IDIEEGEID

Arabidopsis Description

BET9Bromodomain and extraterminal domain protein 9 [Source:UniProtKB/TrEMBL;Acc:F4K6Q7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.