Factsheet for VIT_13s0019g03950.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04734	Soybean	nucleus	71.24	72.56
Solyc09g015660.2.1	Tomato	cytosol	65.28	69.81
Os06t0138000-01	Rice	cytosol, nucleus	18.39	57.26
GSMUA_Achr8P29340_001	Banana	nucleus	55.44	54.73
TraesCS4A01G377900.2	Wheat	cytosol	47.15	51.85
Bra012810.1-P	Field mustard	cytosol	47.67	51.69
TraesCS7A01G080900.1	Wheat	nucleus	46.89	51.57
TraesCS1B01G385900.1	Wheat	cytosol	45.6	51.46
EER87804	Sorghum	nucleus	46.11	51.45
HORVU5Hr1G097840.6	Barley	cytosol	46.63	51.43
TraesCS1A01G367300.1	Wheat	cytosol	46.11	51.0
TraesCS7D01G074500.1	Wheat	cytosol	46.37	51.0
CDX90608	Canola	cytosol	46.89	50.84
CDY29075	Canola	cytoskeleton, cytosol, nucleus	47.67	50.55
HORVU7Hr1G018300.6	Barley	cytosol	45.85	50.28
TraesCS1D01G373000.1	Wheat	cytosol	46.11	49.58
AT3G52280.2	Thale cress	nucleus	49.48	49.48
Zm00001d036092_P004	Maize	endoplasmic reticulum, nucleus, plastid	45.85	48.49
GSMUA_Achr8P34430_001	Banana	nucleus	46.63	41.86
VIT_03s0097g00570.t01	Wine grape	nucleus	22.8	15.94
VIT_19s0014g01650.t01	Wine grape	nucleus	24.61	15.91
VIT_12s0028g02510.t01	Wine grape	nucleus	24.87	14.68
VIT_17s0000g01830.t01	Wine grape	nucleus	23.32	11.92
VIT_10s0003g02240.t01	Wine grape	nucleus	17.1	11.52
VIT_14s0171g00380.t01	Wine grape	nucleus	21.76	11.4

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:100244465	wikigene:100244465	MapMan:15.5.54	InterPro:Bromodomain
InterPro:Bromodomain-like_sf	ProteinID:CCB56203	ProteinID:CCB56203.1	ncoils:Coil	UniProt:F6HNI4	EMBL:FN595998
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:GTE1/GTE6	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336
EntrezGene:LOC100244465	wikigene:LOC100244465	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035
PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF163	SMART:SM00297
SUPFAM:SSF47370	TIGR:TC67669	UniParc:UPI000210A44E	ArrayExpress:VIT_13s0019g03950	EnsemblPlantsGene:VIT_13s0019g03950	EnsemblPlants:VIT_13s0019g03950.t01
unigene:Vvi.13984	RefSeq:XP_002276963	RefSeq:XP_002276963.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:+:5189336..5202862

Molecular Weight (calculated)

44015.3 Da

IEP (calculated)

9.209

GRAVY (calculated)

-0.833

Length

386 amino acids

Sequence
(BLAST)

001: MDASISDTRN METGKNQGNA AQVESLKSRV DDIFTKVDKL EQRVNEVEQF YLTASKKQLN VSKGSSIVKD KDKDKERHVA SVKKQQQDAS RREAAAAKRM
101: QELMRQFGTI LRQITQHKWA WPFMQPVDVE GLGLHDYYEV IEKPMDFSTI KNKMEAKDGA GYKNVREICA DVRLVFKNAM KYNDERRDVH VMAKTLLGKF
201: EEKWLQLLPK VAEEDKRREE EEAEAQLDMH LAQEAAHAKM ARDISNELFE IDMHLDDIRE IIVQKCRKTS TEEKRKLGAA LSRLSAEDLS KALEIVAQSN
301: PSFQATAEEV HLDIDAQRES TLWRLKFFVK DALEIQGKSS ASMGGNNTAT TTNNNHPTTN NNSKRKKEIC DAIAKTAKKK NKKAPS

Best Arabidopsis Sequence Match ( AT2G34900.1 )
(BLAST)

001: MSVHVKEEPV LVPNCDVENT ELAVFNGNGE SELENFGTCV DEITDRVNQL EQKVVEVEHF YSTKDGAAQT NTSKSNSGGK KIAISQPNNS KGNSAGKEKS
101: KGKHVSSPDL MRQFATMFRQ IAQHKWAWPF LEPVDVKGLG LHDYYKVIEK PMDLGTIKKK MESSEYSNVR EIYADVRLVF KNAMRYNEEK EDVYVMAESL
201: LEKFEEKWLL IMPKLVEEEK KQVDEEAEKH ANKQLTMEAA QAEMARDLSN ELYEIDLQLE KLRESVVQRC RKLSTQEKKG LSAALGRLSP EDLSKALKMV
301: SESNPSFPAG APEVELDIDV QTDVTLWRLK VFVQEALKAA NKSSGGTNAQ NNNNTGTGEI NKNNAKRRRE ISDAINKASI KRAKKA

Arabidopsis Description

GTE1Transcription factor GTE1 [Source:UniProtKB/Swiss-Prot;Acc:Q84XV2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.