CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g03950.t01	Wine grape	nucleus	72.56	71.24
Solyc09g015660.2.1	Tomato	cytosol	67.81	71.19
Os06t0138000-01	Rice	cytosol, nucleus	19.0	58.06
KRH45305	Soybean	nucleus	55.41	57.22
Bra012810.1-P	Field mustard	cytosol	52.77	56.18
GSMUA_Achr8P29340_001	Banana	nucleus	57.52	55.75
CDX90608	Canola	cytosol	51.98	55.34
CDY29075	Canola	cytoskeleton, cytosol, nucleus	51.72	53.85
EER87804	Sorghum	nucleus	49.08	53.76
KRH37141	Soybean	cytosol, nucleus	38.52	53.48
TraesCS1A01G367300.1	Wheat	cytosol	48.81	53.01
TraesCS1B01G385900.1	Wheat	cytosol	47.76	52.92
HORVU5Hr1G097840.6	Barley	cytosol	48.81	52.86
TraesCS7A01G080900.1	Wheat	nucleus	48.81	52.71
TraesCS4A01G377900.2	Wheat	cytosol	48.81	52.71
TraesCS7D01G074500.1	Wheat	cytosol	48.28	52.14
AT3G52280.2	Thale cress	nucleus	53.03	52.07
TraesCS1D01G373000.1	Wheat	cytosol	48.81	51.53
HORVU7Hr1G018300.6	Barley	cytosol	47.76	51.42
Zm00001d036092_P004	Maize	endoplasmic reticulum, nucleus, plastid	49.08	50.96
KRH12139	Soybean	nucleus	46.7	50.72
GSMUA_Achr8P34430_001	Banana	nucleus	47.49	41.86
KRH10646	Soybean	nucleus	22.96	16.45
KRH21702	Soybean	nucleus	22.96	16.38
KRH10648	Soybean	nucleus	22.43	15.86
KRH22304	Soybean	nucleus	24.27	14.38
KRH27020	Soybean	nucleus	24.27	14.24
KRH11112	Soybean	nucleus	16.09	10.8
KRH21136	Soybean	nucleus	16.09	10.78
KRH07021	Soybean	nucleus	21.11	10.75
KRH57199	Soybean	nucleus	20.58	10.55
KRH07022	Soybean	nucleus	21.37	10.31
KRH54219	Soybean	nucleus	21.37	10.28
KRG94435	Soybean	nucleus	20.05	10.24
KRH63729	Soybean	nucleus	21.11	10.22
KRH25703	Soybean	nucleus	23.48	10.18
KRH55813	Soybean	nucleus	23.75	9.14

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:100797746	MapMan:15.5.54	UniProt:A0A0R0FEY3	EMBL:ACUP02010525
InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G182700	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:GTE1/GTE6
InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	EnsemblPlants:KRH04734	ProteinID:KRH04734
ProteinID:KRH04734.1	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503
PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF163	SMART:SM00297	SUPFAM:SSF47370
UniParc:UPI0006EDBE68	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:22653847..22662423

Molecular Weight (calculated)

43406.6 Da

IEP (calculated)

6.305

GRAVY (calculated)

-0.811

Length

379 amino acids

Sequence
(BLAST)

001: MVLTTSLMET FGASISEARD AATANSNGEN EIEGFKQRVD EIISKVDKLE QKVHDIENFY SSMNKNQTST PKGNSAAKDK DKEKHVPSIK KQQQDASRRE
101: AAASKRMQDL MRQFGTILRQ ITQHKWAWPF MQPVDIEGLG LHDYYEVIDK PMDFSTIKNQ MEAKDGTGYK HVREICADVR LVFKNAMKYN DERSDVHVMA
201: KTLLSKFEEK WLQLLPKVTE EETRREEEEA EAQLALQVAQ EAAQAKMARD LSNELYEVDV ILEELREMVV KRFRKMSTEE KRKLGDALTR LSPEDLSKAL
301: EIVAQNNPSF QATAEEVDLD MDAQSESTLW RLKFFVKEAL EVQGKNSGSM GGNENQNNKR KRELCDAIAK TKKKTKKLT

Best Arabidopsis Sequence Match ( AT2G34900.1 )
(BLAST)

001: MSVHVKEEPV LVPNCDVENT ELAVFNGNGE SELENFGTCV DEITDRVNQL EQKVVEVEHF YSTKDGAAQT NTSKSNSGGK KIAISQPNNS KGNSAGKEKS
101: KGKHVSSPDL MRQFATMFRQ IAQHKWAWPF LEPVDVKGLG LHDYYKVIEK PMDLGTIKKK MESSEYSNVR EIYADVRLVF KNAMRYNEEK EDVYVMAESL
201: LEKFEEKWLL IMPKLVEEEK KQVDEEAEKH ANKQLTMEAA QAEMARDLSN ELYEIDLQLE KLRESVVQRC RKLSTQEKKG LSAALGRLSP EDLSKALKMV
301: SESNPSFPAG APEVELDIDV QTDVTLWRLK VFVQEALKAA NKSSGGTNAQ NNNNTGTGEI NKNNAKRRRE ISDAINKASI KRAKKA

Arabidopsis Description

GTE1Transcription factor GTE1 [Source:UniProtKB/Swiss-Prot;Acc:Q84XV2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.