CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37141	Soybean	cytosol, nucleus	45.78	61.54
Solyc09g090370.2.1	Tomato	nucleus	53.95	57.23
KRH04734	Soybean	nucleus	57.22	55.41
PGSC0003DMT400044321	Potato	nucleus	56.4	54.91
KRH12139	Soybean	nucleus	52.04	54.73
Bra005383.1-P	Field mustard	nucleus	50.41	48.05
TraesCS1B01G385900.1	Wheat	cytosol	43.87	47.08
AT2G34900.1	Thale cress	nucleus	49.32	46.89
GSMUA_Achr8P29340_001	Banana	nucleus	49.86	46.8
TraesCS7A01G080900.1	Wheat	nucleus	43.32	45.3
EER87804	Sorghum	nucleus	42.51	45.09
TraesCS1A01G367300.1	Wheat	cytosol	42.78	44.99
TraesCS4A01G377900.2	Wheat	cytosol	42.78	44.73
TraesCS7D01G074500.1	Wheat	cytosol	42.78	44.73
TraesCS1D01G373000.1	Wheat	cytosol	43.6	44.57
HORVU5Hr1G097840.6	Barley	cytosol	42.23	44.29
HORVU7Hr1G018300.6	Barley	cytosol	41.96	43.75
CDY31648	Canola	nucleus	50.41	43.53
Zm00001d036092_P004	Maize	endoplasmic reticulum, nucleus, plastid	42.23	42.47
CDX84278	Canola	nucleus	50.68	42.47
Os06t0138000-01	Rice	cytosol, nucleus	13.62	40.32
GSMUA_Achr8P34430_001	Banana	nucleus	42.51	36.28
Bra034451.1-P	Field mustard	cytosol	45.23	31.44
KRH21702	Soybean	nucleus	22.62	15.63
KRH10646	Soybean	nucleus	22.07	15.31
KRH10648	Soybean	nucleus	22.34	15.3
KRH22304	Soybean	nucleus	26.16	15.0
KRH27020	Soybean	nucleus	26.16	14.86
KRH11112	Soybean	nucleus	18.8	12.21
KRH21136	Soybean	nucleus	18.26	11.84
KRH57199	Soybean	nucleus	22.89	11.37
KRH07021	Soybean	nucleus	22.07	10.89
KRH54219	Soybean	nucleus	22.89	10.66
KRH25703	Soybean	nucleus	25.34	10.64
KRH63729	Soybean	nucleus	22.34	10.47
KRH07022	Soybean	nucleus	22.07	10.31
KRG94435	Soybean	nucleus	20.71	10.24
KRH55813	Soybean	nucleus	25.07	9.34

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:100818490	MapMan:15.5.54	EMBL:ACUP02005163	InterPro:Bromodomain
InterPro:Bromodomain-like_sf	EnsemblPlantsGene:GLYMA_08G264100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:GTE1/GTE6	InterPro:IPR001487	InterPro:IPR027353
InterPro:IPR036427	InterPro:IPR038336	UniProt:K7L905	EnsemblPlants:KRH45305	ProteinID:KRH45305	ProteinID:KRH45305.1
InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014
PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF163	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0002338297
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:29733298..29744514

Molecular Weight (calculated)

42001.0 Da

IEP (calculated)

5.987

GRAVY (calculated)

-0.785

Length

367 amino acids

Sequence
(BLAST)

001: MDADPPQLDD HLEPFRVSVN QILTTVNKLE KQVTEVEQFY ESTDNVQGNN SKGGSLAKEK GREKHITGTK KPLQDASHTE ASSAKRMQEL MRQFSTILRQ
101: ITQHKWAWPF MDPVDVEGLG LHDYYEIIDK PMDFGTIKSK MEAKDGTGYN NVREIYADVR LIFKNAMKYN NEKNDVHVMA KTLLEKFEEK WLQLLPKVAE
201: EEKRQLEEEA QAQLDIQLAL ETTYANKAKD ISTELCEIDM HLKSLKEMVI QQCRKLSTQE KKMLMSALGK LSLENLYRAL DIIAETNPMF QPSSTEDVVL
301: DLDAQSDYTL WRLKAFVKDS LEEQVKVNAG AGINPNDNPD DKKNKKRRDS GDSSGKTNPK RKKLSTL

Best Arabidopsis Sequence Match ( AT2G34900.1 )
(BLAST)

001: MSVHVKEEPV LVPNCDVENT ELAVFNGNGE SELENFGTCV DEITDRVNQL EQKVVEVEHF YSTKDGAAQT NTSKSNSGGK KIAISQPNNS KGNSAGKEKS
101: KGKHVSSPDL MRQFATMFRQ IAQHKWAWPF LEPVDVKGLG LHDYYKVIEK PMDLGTIKKK MESSEYSNVR EIYADVRLVF KNAMRYNEEK EDVYVMAESL
201: LEKFEEKWLL IMPKLVEEEK KQVDEEAEKH ANKQLTMEAA QAEMARDLSN ELYEIDLQLE KLRESVVQRC RKLSTQEKKG LSAALGRLSP EDLSKALKMV
301: SESNPSFPAG APEVELDIDV QTDVTLWRLK VFVQEALKAA NKSSGGTNAQ NNNNTGTGEI NKNNAKRRRE ISDAINKASI KRAKKA

Arabidopsis Description

GTE1Transcription factor GTE1 [Source:UniProtKB/Swiss-Prot;Acc:Q84XV2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.