Factsheet for TraesCS1B01G385900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G373000.1	Wheat	cytosol	96.2	91.64
TraesCS1A01G367300.1	Wheat	cytosol	93.27	91.4
Os06t0138000-01	Rice	cytosol, nucleus	26.9	74.19
EER87804	Sorghum	nucleus	67.25	66.47
Zm00001d036092_P004	Maize	endoplasmic reticulum, nucleus, plastid	66.96	62.74
Solyc09g015660.2.1	Tomato	cytosol	50.88	48.2
KRH04734	Soybean	nucleus	52.92	47.76
Solyc09g090370.2.1	Tomato	nucleus	47.66	47.11
VIT_13s0019g03950.t01	Wine grape	nucleus	51.46	45.6
GSMUA_Achr8P29340_001	Banana	nucleus	51.75	45.27
PGSC0003DMT400044321	Potato	nucleus	49.71	45.09
KRH45305	Soybean	nucleus	47.08	43.87
KRH37141	Soybean	cytosol, nucleus	34.21	42.86
Bra012810.1-P	Field mustard	cytosol	43.86	42.13
CDX90608	Canola	cytosol	43.27	41.57
CDY29075	Canola	cytoskeleton, cytosol, nucleus	44.15	41.48
AT2G34900.1	Thale cress	nucleus	45.61	40.41
KRH12139	Soybean	nucleus	40.64	39.83
Bra005383.1-P	Field mustard	nucleus	44.74	39.74
AT3G52280.2	Thale cress	nucleus	43.57	38.6
CDY31648	Canola	nucleus	44.74	36.0
CDX84278	Canola	nucleus	44.74	34.93
GSMUA_Achr8P34430_001	Banana	nucleus	41.23	32.79
Bra034451.1-P	Field mustard	cytosol	40.64	26.33
TraesCS3B01G265200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	14.33	22.79
TraesCS3B01G265300.1	Wheat	cytosol, nucleus, plastid	13.74	21.36
TraesCS5B01G052900.1	Wheat	plastid	13.74	19.75
TraesCS3B01G164100.1	Wheat	nucleus, plastid	23.1	15.49
TraesCS2B01G489500.1	Wheat	plastid	19.88	14.69
TraesCS7B01G461100.3	Wheat	nucleus, plastid	16.37	10.24
TraesCS3B01G103200.2	Wheat	nucleus	20.76	9.93
TraesCS6B01G244000.2	Wheat	plastid	20.47	9.72
TraesCS3B01G141400.2	Wheat	nucleus, plastid	20.18	9.68
TraesCS7B01G212400.2	Wheat	nucleus	19.3	8.8

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:GTE1/GTE6	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336
InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014
PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF163	SMART:SM00297	SUPFAM:SSF47370	EnsemblPlantsGene:TraesCS1B01G385900
EnsemblPlants:TraesCS1B01G385900.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:619416943..619420250

Molecular Weight (calculated)

38768.0 Da

IEP (calculated)

5.739

GRAVY (calculated)

-0.632

Length

342 amino acids

Sequence
(BLAST)

001: MEPPAAAADG PQVSEVDSFR RQVDDLLSKT DVLEKRVNEV VGFYNSKKHS SGGRKAGGRY AANGARDSHG NGMPDLMRQF AGIIRQITSH EWAQPFLQPV
101: DVVGLQLDDY HQIITKPMDF STIRNKMEGK ESTTYNSVRE IYSDVRLVFT NAMKYNVQGH PVHIMAKFLL ERFEEKWLHL LPKVENEERE REEPNDAPTI
201: SISPEAAIAI LAEDTGNELN EINKQLEELQ KMVVQRCRKM TTDEKRKLGA GLCQLSPEDL NKALELVAQD NPSFQTTAEE VDLDMDAQSE TTLWRLKFFV
301: REALEQQANV GVVACGKIDE NTKRSRDMYN ALAKTVSKRI KR

Best Arabidopsis Sequence Match ( AT3G52280.1 )
(BLAST)

001: MADSVPGHVA GGGLQGFSVD AECIKQRVDE VLQWVDSLEH KLKEVEEFYS SIGVSNSGSI GKDTEKGRHV VGIRKIQQEA ARREAVAAKR MQDLMRQFGT
101: IFRQITQHKC AWPFMHPVNV EGLGLHDYFE VIDKPMDFST IKNQMEAKDG TGYKHVMQIY ADMRLVFENA MNYNEETSDV YSMAKKLLEK FEEKWAHFLP
201: KVQEEEKIRE EEEKQAAKEA LLAKEASHIK TTRELGNEIC HANDELEKLM RKVVERCRKI TIEEKRNIGL ALLKLSPDDL QKVLGIVAQA NPSFQPRAEE
301: VSIEMDILDE PTLWRLKFFV KDALDNAMKK KKEEETKTRE LSGAQKKEVS KKRNATTKLA ERKTKRSRI

Arabidopsis Description

GTE6General transcription factor group E6 [Source:UniProtKB/TrEMBL;Acc:F4J6V6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.