Factsheet for TraesCS6B01G244000.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G323000.1
TraesCS2A01G323200.1
TraesCS2B01G359400.1
TraesCS2B01G359600.1
TraesCS2D01G339700.1
TraesCS2D01G339900.1
TraesCS3A01G413600.1
TraesCS3A01G413700.1
TraesCS3B01G448000.1
TraesCS3B01G448100.1
TraesCS3D01G408000.1
TraesCS3D01G408100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01770.1	TraesCS2A01G323000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2A01G323200.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2B01G359400.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2B01G359600.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2D01G339700.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2D01G339900.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3A01G413600.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3A01G413700.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3B01G448000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3B01G448100.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3D01G408000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3D01G408100.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2A01G323000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2A01G323200.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2B01G359400.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2B01G359600.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2D01G339700.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2D01G339900.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3A01G413600.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3A01G413700.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3B01G448000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3B01G448100.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3D01G408000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3D01G408100.1	AT5G63160.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G196600.3	Wheat	nucleus	95.97	98.29
TraesCS6A01G214000.1	Wheat	nucleus	95.97	97.88
HORVU6Hr1G054560.16	Barley	nucleus	93.33	93.99
TraesCS3B01G103200.2	Wheat	nucleus	85.97	86.57
TraesCS3B01G141400.2	Wheat	nucleus, plastid	83.75	84.57
Os02t0601800-03	Rice	nucleus	79.72	80.39
EES07108	Sorghum	nucleus	77.08	78.06
Zm00001d017126_P001	Maize	nucleus	74.31	76.87
VIT_17s0000g01830.t01	Wine grape	nucleus	45.42	43.31
GSMUA_Achr8P01140_001	Banana	nucleus	44.58	42.74
GSMUA_Achr8P08920_001	Banana	nucleus	37.92	42.0
VIT_14s0171g00380.t01	Wine grape	nucleus	42.92	41.93
Bra025262.1-P	Field mustard	nucleus	31.25	41.59
KRH07021	Soybean	nucleus	42.5	41.13
Bra038624.1-P	Field mustard	nucleus	13.75	40.91
KRH63729	Soybean	nucleus	44.17	40.61
KRG94435	Soybean	nucleus	41.67	40.43
Bra039088.1-P	Field mustard	nucleus	36.53	40.4
CDY20057	Canola	nucleus	36.11	40.31
GSMUA_Achr10P...	Banana	nucleus	35.56	40.13
KRH57199	Soybean	nucleus	40.69	39.65
KRH54219	Soybean	nucleus	43.33	39.59
GSMUA_Achr2P20970_001	Banana	nucleus	39.58	39.58
Solyc03g111090.2.1	Tomato	nucleus	42.36	39.05
PGSC0003DMT400052108	Potato	nucleus	39.31	38.82
PGSC0003DMT400039290	Potato	nucleus	42.08	38.55
Solyc02g093880.2.1	Tomato	nucleus	38.19	37.93
AT3G01770.1	Thale cress	nucleus	32.36	37.58
GSMUA_Achr3P02660_001	Banana	plasma membrane	34.03	37.46
CDY13699	Canola	nucleus	23.61	37.2
AT5G14270.2	Thale cress	nucleus	35.0	36.57
KRH07022	Soybean	nucleus	39.03	35.75
TraesCS7B01G212400.2	Wheat	nucleus	36.81	35.33
CDX83673	Canola	nucleus	23.61	34.14
GSMUA_Achr3P02670_001	Banana	nucleus	33.06	33.76
AT3G27260.3	Thale cress	nucleus	37.92	33.21
CDX84396	Canola	nucleus	27.92	32.79
TraesCS7B01G461100.3	Wheat	nucleus, plastid	22.5	29.62
TraesCS3B01G265200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	8.06	26.98
TraesCS2B01G489500.1	Wheat	plastid	17.22	26.78
AT5G63320.1	Thale cress	nucleus	38.75	26.3
TraesCS3B01G265300.1	Wheat	cytosol, nucleus, plastid	7.78	25.45
CDY48139	Canola	nucleus	30.28	24.66
TraesCS5B01G052900.1	Wheat	plastid	7.92	23.95
TraesCS3B01G164100.1	Wheat	nucleus, plastid	15.97	22.55
TraesCS1B01G385900.1	Wheat	cytosol	9.72	20.47
CDY16729	Canola	nucleus	32.08	20.23
Bra035848.1-P	Field mustard	nucleus	32.08	19.4

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353
InterPro:IPR036427	InterPro:IPR038336	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035
PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF231	SMART:SM00297
SUPFAM:SSF47370	EnsemblPlantsGene:TraesCS6B01G244000	EnsemblPlants:TraesCS6B01G244000.2	TIGR:cd05506	SEG:seg	:

Description

No Description!

Coordinates

chr6B:-:434298797..434302725

Molecular Weight (calculated)

79820.3 Da

IEP (calculated)

5.265

GRAVY (calculated)

-0.716

Length

720 amino acids

Sequence
(BLAST)

001: MFVIIQQICA TSLAPGNMTP TVLMEFAPQR QIKRSYDEMA YRGVPRGYAE TVGESGSPVR VDSQDSSAPK RKCISLNSDG FGVKREIFVP SKMSSSERRY
101: LRKRFRSELD SVRDLLKKPE FLAIMPASRA PAYSSSAAPR AKKVKGGSHV LRGAKGRFLP TKPRPETSMV LPKATILQMC EGILKKLMTQ KCSHIFNVPV
201: DVEKLNIPDY NDIIKHPMDL GTIKKKLDSG SYTRPSDFAA DVRLTFSNAI TYNPRGHAVH DMAIQLNKMF ESRWKTVEKK LASAATKPHV EVDRADSKRR
301: KTPPVDRSDL SIERVRPTEI MKPKMTFEEK ESFGNCLASL SEEPELLPGH IIDLLQQCID NNTDQPGDGE IEIDIHALSD DILLELKKHV DKYLQERDNQ
401: QKKSEPSENW AVNVPGLSHL STNPCKGGEP IEEDVDICGN ASPILIGKDP QIRTNKCGSP SSSSSDSGSS SSDSDSGSDT ESESEKVGSP AKLAKVTKIP
501: EQPAEQEKSD VINPVDANHT AGDVELREQD NESKAAPEGE NAKLDRQVSP DKLLRAALLR SRYADVIVKA RGILSQGEGG DKQEELEKLQ KEEKERLLAE
601: GNAAMEARRA EAEAESKRKR DLEREKARQA LQEMERTVEI NDSVHPKDLE MLGTITTEHI VSSVDETSPE HSQDGMPSFL PGSGSMLEKL GLFMKVDEDE
701: EEDEPCSFPS SKDVEEVEID

Best Arabidopsis Sequence Match ( AT3G27260.4 )
(BLAST)

001: MVESAAFPGG YYRNTFEAPE ESEGSGSSAQ IDTEVTASEN SSTPARKCIM LNSNDEDPYG VQRQVISLYN MSQSERKDLI YRLKLELEQT KIVLKNAELQ
101: RMNPAAVSST SDRVGFSTGQ KISSRVSNSK KPSDFAVGSG KKVRHQNGTS RGWNRGTSGK FESSKETMTS TPNITLMKQC DTLLRKLWSH PHSWVFQAPV
201: DVVKLNIPDY LTTIKHPMDL GTVKKNLASG VYSSPHEFAA DVRLTFTNAM TYNPPGHDVH IMGDILSKLF EARWKTIKKK LPPCSMQTLP AVTLEPNDER
301: KAAISVPPAK KRKMASPVRE SVPEPVKPLM TEVERHRLGR QLESLLDELP AHIIDFLKKH NSNGGEIAED EIEIDIDVLS DEVLVTLRNL LDEYIQNKEA
401: KQTNVEPCEI ELINGSRPSN SSLQRGNEMA DEYVDGNEPP ISRSSSDSDS GSSEDQSDDA KPMVQGDSSK MPETANSEAQ RDENTRIDDL FVGSQSTGAL
501: EQMDICSQQK LSSDESDGQH EGNILETPAS SEKRYRAALL KNRFADIILK AREKPLPQNG IKGDPERLRK EREELVLQKK KEKARLQAEA EAAEDARRQA
601: EAEAAAEAAA EAKRKRELER EAARQALLKM EKTVEINENS RFLEDLEMLS SSAPEQLPSS AEETSPERPL DALGSFNLRG SNPLEQLGLY MKQDDDEEEP
701: EAPAVPNLAN DVEEGEID

Arabidopsis Description

GTE8Global transcription factor group E8 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.