Factsheet for TraesCS3B01G141400.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

mitochondrion 2
nucleus 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G323000.1
TraesCS2A01G323200.1
TraesCS2B01G359400.1
TraesCS2B01G359600.1
TraesCS2D01G339700.1
TraesCS2D01G339900.1
TraesCS3A01G413600.1
TraesCS3A01G413700.1
TraesCS3B01G448000.1
TraesCS3B01G448100.1
TraesCS3D01G408000.1
TraesCS3D01G408100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01770.1	TraesCS2A01G323000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2A01G323200.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2B01G359400.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2B01G359600.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2D01G339700.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2D01G339900.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3A01G413600.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3A01G413700.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3B01G448000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3B01G448100.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3D01G408000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3D01G408100.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2A01G323000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2A01G323200.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2B01G359400.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2B01G359600.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2D01G339700.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2D01G339900.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3A01G413600.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3A01G413700.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3B01G448000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3B01G448100.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3D01G408000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3D01G408100.1	AT5G63160.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G124100.1	Wheat	nucleus	96.35	96.35
TraesCS3A01G122200.1	Wheat	nucleus	95.93	95.93
HORVU3Hr1G022660.1	Barley	nucleus	91.87	91.99
TraesCS3B01G103200.2	Wheat	nucleus	84.71	84.48
TraesCS6B01G244000.2	Wheat	plastid	84.57	83.75
Os02t0601800-03	Rice	nucleus	77.56	77.45
EES07108	Sorghum	nucleus	73.07	73.28
Zm00001d017126_P001	Maize	nucleus	70.83	72.56
VIT_17s0000g01830.t01	Wine grape	nucleus	44.74	42.25
GSMUA_Achr8P01140_001	Banana	nucleus	44.18	41.94
VIT_14s0171g00380.t01	Wine grape	nucleus	43.06	41.66
GSMUA_Achr8P08920_001	Banana	nucleus	37.59	41.23
Bra025262.1-P	Field mustard	nucleus	31.14	41.04
Bra038624.1-P	Field mustard	nucleus	13.88	40.91
KRH07021	Soybean	nucleus	41.94	40.19
KRH63729	Soybean	nucleus	44.04	40.1
KRG94435	Soybean	nucleus	41.09	39.49
KRH54219	Soybean	nucleus	43.2	39.09
KRH57199	Soybean	nucleus	40.39	38.97
GSMUA_Achr10P...	Banana	nucleus	34.78	38.87
CDY20057	Canola	nucleus	35.06	38.76
GSMUA_Achr2P20970_001	Banana	nucleus	39.13	38.75
Bra039088.1-P	Field mustard	nucleus	35.2	38.56
Solyc03g111090.2.1	Tomato	nucleus	41.8	38.16
PGSC0003DMT400052108	Potato	nucleus	38.57	37.72
PGSC0003DMT400039290	Potato	nucleus	41.51	37.66
AT3G01770.1	Thale cress	nucleus	32.54	37.42
AT5G14270.2	Thale cress	nucleus	35.9	37.16
GSMUA_Achr3P02660_001	Banana	plasma membrane	33.94	37.0
Solyc02g093880.2.1	Tomato	nucleus	37.45	36.83
CDY13699	Canola	nucleus	23.14	36.1
TraesCS7B01G212400.2	Wheat	nucleus	36.61	34.8
KRH07022	Soybean	nucleus	38.01	34.48
GSMUA_Achr3P02670_001	Banana	nucleus	33.66	34.04
CDX83673	Canola	nucleus	23.28	33.33
AT3G27260.3	Thale cress	nucleus	37.17	32.24
CDX84396	Canola	nucleus	27.21	31.65
TraesCS3B01G265200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	8.56	28.37
TraesCS7B01G461100.3	Wheat	nucleus, plastid	21.18	27.61
TraesCS3B01G265300.1	Wheat	cytosol, nucleus, plastid	8.27	26.82
TraesCS2B01G489500.1	Wheat	plastid	17.39	26.78
AT5G63320.1	Thale cress	nucleus	37.31	25.07
TraesCS5B01G052900.1	Wheat	plastid	8.13	24.37
CDY48139	Canola	nucleus	29.03	23.42
TraesCS3B01G164100.1	Wheat	nucleus, plastid	16.41	22.94
TraesCS1B01G385900.1	Wheat	cytosol	9.68	20.18
CDY16729	Canola	nucleus	30.72	19.18
Bra035848.1-P	Field mustard	nucleus	30.72	18.39

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353
InterPro:IPR036427	InterPro:IPR038336	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035
PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF231	SMART:SM00297
SUPFAM:SSF47370	EnsemblPlantsGene:TraesCS3B01G141400	EnsemblPlants:TraesCS3B01G141400.2	TIGR:cd05506	SEG:seg	:

Description

No Description!

Coordinates

chr3B:-:127929607..127936324

Molecular Weight (calculated)

78704.6 Da

IEP (calculated)

5.116

GRAVY (calculated)

-0.758

Length

713 amino acids

Sequence
(BLAST)

001: MPTTSISKPK QVCASLAPGN MTSTVRMECG PQMQTKRSYD EIAYRGAGYV EKVGESGSPV RVGGEDYSAP KRKCISLNSD GFNVKRETFV PSKMSSSERR
101: YLRKRFRAEL DSVRELLKKP EFLSVMPVSK APAFSSSAAP RPKKVQRGSH VVRGAKGRFL PTKPRPETST VLPEATILKQ CEAILKKLMT QKCSHIFNDP
201: VDVEKLNLPD YNDIIKHPMD LGTIKKKLDS GSYASPSDFA ADVRLTFNNA ITYNPRGHVV HDLAIQLNKM FESRWRTVEK KLATAVTKPH VEVDKADSKR
301: RKTPPVERSN LSIDRVRPTE IVKPKMTKEE RESLGDCLSS LAEGPEELPG PIIDLLQQCM DNNTEQHGDG EIEIDIHALS DDVLFELKKR VDTYLQERDH
401: QQTKSQPSEN EAVNVSGLSH SSTNPCKGAE PVEEDVDICG NASPILIEKD PQIRTDKCGS PSSSSSDSGS SSSDSDSGSD IESEPEKVVS PAKPAKGPEQ
501: PAEQVKSDDV ISPVDANQTA ADVELREQDN ESKAAPEGEN AKPDRQVSPD KLLRAAVLRG RYADVIVKAR GILSQVGDKQ EELEKLQKEE KERLLAEGNA
601: ALEARRAEAE AESKRKLDLE REKARQALQE MERTVEINDI VHPKDLEMLG TVTTEHIMSS VDETSPEHSQ DGLPSFLPGS GSMLEKLGLF MKVDEEEEEE
701: EPCSKGAEDG EIN

Best Arabidopsis Sequence Match ( AT3G01770.1 )
(BLAST)

001: MTVRNGGFPG DYNRNSFDSP GGCDDSPNAS KDDETFGVPR IVLPLSDLSS SERRKWIHTL RQELEQLRSF QKSVGDLLPI SKIVTSTPAS NVSRPKSFGM
101: SRCSTGPGKR VLPFTATKPE PVTTSTMLRM KQCESLLKRL MSQQHCWLFN TPVDVVKLNI PDYFTIIKHP MDLGTVKSKL TSGTYSSPSE FSADVRLTFR
201: NAMTYNPSDN NVYRFADTLS KFFEVRWKTI EKKSSGTKSE PSNLATLAHK DIAIPEPVAK KRKMNAVKRN SLLEPAKRVM TDEDRVKLGR DLGSLTEFPV
301: QIINFLRDHS SKEERSGDDE IEIDINDLSH DALFQLRDLF DEFLRENQKK DSNGEPCVLE LLHGSGPGNS LTQHCDGSEL EDEDVDIGNY EHPISHISTV
401: RTEKDSVGGL NQMEDASRGK LSLIEGADGH QDGNSAPKEK ELPPEKRYRA ALLKNRFADI ILKAQEITLN QNEKRDPETL QREKEELELQ KKKEKARLQA
501: EAKEAEEARR KAEAQEAKRK LELEREAARQ ALLEMEKSVE INENTRFLKD LELLKTVNTD QLRNLRDVGS ESDGLAVFGF GGSNPLEQLG LFMKHEEDED
601: ESDMLAFPDP GNEVEEGEID

Arabidopsis Description

GTE11Transcription factor GTE11 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZB7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.