Factsheet for TraesCS3D01G124100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G323000.1
TraesCS2A01G323200.1
TraesCS2B01G359400.1
TraesCS2B01G359600.1
TraesCS2D01G339700.1
TraesCS2D01G339900.1
TraesCS3A01G413600.1
TraesCS3A01G413700.1
TraesCS3B01G448000.1
TraesCS3B01G448100.1
TraesCS3D01G408000.1
TraesCS3D01G408100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01770.1	TraesCS2A01G323000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2A01G323200.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2B01G359400.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2B01G359600.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2D01G339700.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2D01G339900.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3A01G413600.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3A01G413700.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3B01G448000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3B01G448100.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3D01G408000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3D01G408100.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2A01G323000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2A01G323200.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2B01G359400.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2B01G359600.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2D01G339700.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2D01G339900.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3A01G413600.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3A01G413700.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3B01G448000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3B01G448100.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3D01G408000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3D01G408100.1	AT5G63160.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G122200.1	Wheat	nucleus	97.62	97.62
TraesCS3B01G141400.2	Wheat	nucleus, plastid	96.35	96.35
HORVU3Hr1G022660.1	Barley	nucleus	92.43	92.56
TraesCS3D01G087900.4	Wheat	nucleus	85.13	84.78
TraesCS6D01G196600.3	Wheat	nucleus	83.31	84.5
Os02t0601800-03	Rice	nucleus	77.28	77.17
EES07108	Sorghum	nucleus	73.21	73.42
Zm00001d017126_P001	Maize	nucleus	71.53	73.28
GSMUA_Achr8P01140_001	Banana	nucleus	44.04	41.81
VIT_17s0000g01830.t01	Wine grape	nucleus	44.18	41.72
Bra025262.1-P	Field mustard	nucleus	31.14	41.04
VIT_14s0171g00380.t01	Wine grape	nucleus	42.36	40.98
GSMUA_Achr8P08920_001	Banana	nucleus	37.31	40.92
Bra038624.1-P	Field mustard	nucleus	13.88	40.91
KRH07021	Soybean	nucleus	41.66	39.92
KRH63729	Soybean	nucleus	43.76	39.85
KRG94435	Soybean	nucleus	40.95	39.35
CDY20057	Canola	nucleus	35.06	38.76
KRH54219	Soybean	nucleus	42.78	38.71
KRH57199	Soybean	nucleus	39.97	38.57
Bra039088.1-P	Field mustard	nucleus	35.2	38.56
GSMUA_Achr10P...	Banana	nucleus	34.36	38.4
GSMUA_Achr2P20970_001	Banana	nucleus	38.71	38.33
Solyc03g111090.2.1	Tomato	nucleus	41.37	37.77
AT5G14270.2	Thale cress	nucleus	36.33	37.59
AT3G01770.1	Thale cress	nucleus	32.68	37.58
PGSC0003DMT400052108	Potato	nucleus	38.15	37.31
PGSC0003DMT400039290	Potato	nucleus	40.95	37.15
Solyc02g093880.2.1	Tomato	nucleus	37.03	36.41
GSMUA_Achr3P02660_001	Banana	plasma membrane	33.38	36.39
CDY13699	Canola	nucleus	23.14	36.1
TraesCS7D01G309100.1	Wheat	nucleus	37.17	35.33
KRH07022	Soybean	nucleus	37.87	34.35
GSMUA_Achr3P02670_001	Banana	nucleus	33.1	33.48
CDX83673	Canola	nucleus	23.28	33.33
AT3G27260.3	Thale cress	nucleus	37.31	32.36
CDX84396	Canola	nucleus	27.35	31.81
TraesCS7D01G526000.1	Wheat	nucleus, plastid	21.6	28.52
TraesCS3D01G235000.1	Wheat	cytosol, nucleus, plastid	8.56	28.24
TraesCS2D01G466700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	17.11	25.96
TraesCS3D01G234900.1	Wheat	cytosol, nucleus, plastid	7.99	25.68
AT5G63320.1	Thale cress	nucleus	37.17	24.98
CDY48139	Canola	nucleus	29.03	23.42
TraesCS3D01G146600.1	Wheat	nucleus, plastid	16.13	22.73
TraesCS7D01G074500.1	Wheat	cytosol	9.82	19.94
CDY16729	Canola	nucleus	30.57	19.09
TraesCS1D01G373000.1	Wheat	cytosol	9.54	18.94
TraesCS6D01G177700.1	Wheat	cytosol, plastid	16.55	18.58
Bra035848.1-P	Field mustard	nucleus	30.57	18.3

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353
InterPro:IPR036427	InterPro:IPR038336	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035
PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF231	SMART:SM00297
SUPFAM:SSF47370	EnsemblPlantsGene:TraesCS3D01G124100	EnsemblPlants:TraesCS3D01G124100.1	TIGR:cd05506	SEG:seg	:

Description

No Description!

Coordinates

chr3D:-:81713989..81721615

Molecular Weight (calculated)

78643.6 Da

IEP (calculated)

5.115

GRAVY (calculated)

-0.722

Length

713 amino acids

Sequence
(BLAST)

001: MPTTSISKPK QVCASLAPGN MTPTVRMECG PQMQTKRSYD EIAYRGAGYA ETVGESGSPV CAGLEGFSAR KRKCISLNTD GFDVKREIFV PSKMSSSERR
101: YLRKRFRAEL DSVRELLKKP EFLSVMPVSK APAFSSSAAP RAKKVQRGSH VVRGAKGRFL PTKPRPETST VLPEATILKQ CEAILKKLMT QKCSHIFNDP
201: VDVEKLNLPD YNDIIKHPMD LGTIKKKLDS GSYASPSDFA ADVRLTFNNA ITYNPRGHVV HDLAIQLNKM FESRWRTVEK KLATAATKPH VEVDKADSKR
301: RKTPPVERSN LSIDRVRPTE IVKPKMTKEE RETLGDCLTS LAEGPEELPG HIIDLLQQCM ENNTEQHGDG EIEIDIHALS DDVLFELKKH VDTYLQEKDH
401: QQTKSQPSEN EAVNVSCLSH SSTNPCKGAE PVEEDVDICG NASPILIEKD PQIRTDKCGS PSSSSSDSGS SSSDSDSGSD IESEPEKVVS PAKLAKGPEQ
501: PAEQVKSDDV ISPVDANQTA ADVELREQDN ESKAAPEGEN AKPDRQLSPD KLLRAAVLRG RYADVIVKAR GILSQGGDKQ EELEKLQKEE KERLLAEGNA
601: ALEARRAEAE AESKRKLELE REKARQALQE MERTVEINDI VHPKDLEMLG TVTTEHIVSS VDETSPEHSQ DGLPSFLPGS GSMLEKLGLF MKVDEEEEEE
701: EPCSKGAEDG EIN

Best Arabidopsis Sequence Match ( AT5G14270.2 )
(BLAST)

001: MTERNGGFPG DYCFEAPGGD YDEGSDSPRV SEGSNCSKRK VGETFGVSKM VLPLSGLSSS DRKELIRRLR QELEQIRVFQ KNFELSRTVA LTSSSASGLT
101: RVKSFGMSRC STGPGKTVNP ISAASKPTPV TTAVMLLMKQ CEALLKRLMS HQYGWVFNTP VDVVKLNILD YFNVIEHPMD LGTVKNKLTS GTYSCPSEFA
201: ADVRLTFSNA MTYNPPGNDV YVMADTLRKF FEVRWKTLEK KLSGTKVHTE PSNLDAHKEK HIVIPVPMAK KRKTTAVDCE NVVDPAKRVM TDEDRLKLGK
301: DLESLTEFPA QLINFLRDHN SNEGGIGDDE IEIDINDLSD HALFQLRDLL DEHLREIQNK KSSVEPCEIE LLHGSVPGNS SMQHCDGSEL DDEVVDIGEN
401: EHPTSSISPV TIEKDLVLGN SNGNSLGSVS GDPKMSSLPR ASKGLGTIDL EPMLDGATSA SPTRGLASVG GLDQLESASP EKISSVEADC QQDGNSAQNE
501: KQLPPEKSYR AAILKNRFAD IILKAREKPL NQNDTRDPEK LQREREELEL QKKKEKARLQ AEAKAAEEAR RKAEAQAAAE AAAEAKRKLE LEREAARQAL
601: MEMEQSVELN ENAKFLEDLE LLKTVDTDHL TNTIEEEDGP DVGLRSFSFG GSNPLEQLGL FMKQDEDEEE ADPLTSPAPE IDIEEGEID

Arabidopsis Description

BET9Bromodomain and extraterminal domain protein 9 [Source:UniProtKB/TrEMBL;Acc:F4K6Q7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.