Factsheet for TraesCS3D01G087900.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G323000.1
TraesCS2A01G323200.1
TraesCS2B01G359400.1
TraesCS2B01G359600.1
TraesCS2D01G339700.1
TraesCS2D01G339900.1
TraesCS3A01G413600.1
TraesCS3A01G413700.1
TraesCS3B01G448000.1
TraesCS3B01G448100.1
TraesCS3D01G408000.1
TraesCS3D01G408100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01770.1	TraesCS2A01G323000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2A01G323200.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2B01G359400.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2B01G359600.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2D01G339700.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2D01G339900.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3A01G413600.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3A01G413700.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3B01G448000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3B01G448100.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3D01G408000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3D01G408100.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2A01G323000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2A01G323200.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2B01G359400.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2B01G359600.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2D01G339700.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2D01G339900.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3A01G413600.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3A01G413700.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3B01G448000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3B01G448100.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3D01G408000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3D01G408100.1	AT5G63160.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G087800.1	Wheat	plastid	83.52	98.03
TraesCS3B01G103200.2	Wheat	nucleus	96.79	96.92
HORVU3Hr1G015760.1	Barley	nucleus	70.81	91.85
TraesCS6D01G196600.3	Wheat	nucleus	87.01	88.62
TraesCS3D01G124100.1	Wheat	nucleus	84.78	85.13
Os02t0601800-03	Rice	nucleus	80.31	80.53
EES07108	Sorghum	nucleus	75.98	76.51
Zm00001d017126_P001	Maize	nucleus	73.88	76.01
GSMUA_Achr8P01140_001	Banana	nucleus	45.39	43.28
VIT_17s0000g01830.t01	Wine grape	nucleus	45.53	43.18
GSMUA_Achr8P08920_001	Banana	nucleus	39.11	43.08
VIT_14s0171g00380.t01	Wine grape	nucleus	43.02	41.79
Bra038624.1-P	Field mustard	nucleus	14.11	41.74
Bra025262.1-P	Field mustard	nucleus	31.15	41.22
KRH63729	Soybean	nucleus	44.97	41.12
KRH57199	Soybean	nucleus	41.34	40.05
KRH07021	Soybean	nucleus	41.48	39.92
KRH54219	Soybean	nucleus	43.85	39.85
GSMUA_Achr10P...	Banana	nucleus	35.47	39.81
GSMUA_Achr2P20970_001	Banana	nucleus	39.94	39.72
KRG94435	Soybean	nucleus	40.92	39.49
Solyc03g111090.2.1	Tomato	nucleus	42.6	39.05
Bra039088.1-P	Field mustard	nucleus	35.2	38.71
GSMUA_Achr3P02660_001	Banana	plasma membrane	35.34	38.69
CDY20057	Canola	nucleus	34.78	38.6
PGSC0003DMT400039290	Potato	nucleus	42.04	38.3
PGSC0003DMT400052108	Potato	nucleus	38.69	38.0
Solyc02g093880.2.1	Tomato	nucleus	37.57	37.1
AT3G01770.1	Thale cress	nucleus	32.12	37.1
AT5G14270.2	Thale cress	nucleus	35.61	37.01
CDY13699	Canola	nucleus	23.04	36.1
TraesCS7D01G309100.1	Wheat	nucleus	37.71	36.0
KRH07022	Soybean	nucleus	38.83	35.37
GSMUA_Achr3P02670_001	Banana	nucleus	34.22	34.75
CDX83673	Canola	nucleus	23.18	33.33
AT3G27260.3	Thale cress	nucleus	37.43	32.6
CDX84396	Canola	nucleus	27.51	32.14
TraesCS7D01G526000.1	Wheat	nucleus, plastid	21.93	29.07
TraesCS3D01G235000.1	Wheat	cytosol, nucleus, plastid	8.1	26.85
TraesCS2D01G466700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	17.32	26.38
AT5G63320.1	Thale cress	nucleus	37.99	25.64
TraesCS3D01G234900.1	Wheat	cytosol, nucleus, plastid	7.54	24.32
CDY48139	Canola	nucleus	29.05	23.53
TraesCS3D01G146600.1	Wheat	nucleus, plastid	16.2	22.92
TraesCS7D01G074500.1	Wheat	cytosol	10.47	21.37
TraesCS1D01G373000.1	Wheat	cytosol	10.06	20.06
CDY16729	Canola	nucleus	31.56	19.79
Bra035848.1-P	Field mustard	nucleus	31.56	18.98
TraesCS6D01G177700.1	Wheat	cytosol, plastid	16.62	18.74

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353
InterPro:IPR036427	InterPro:IPR038336	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035
PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF231	SMART:SM00297
SUPFAM:SSF47370	EnsemblPlantsGene:TraesCS3D01G087900	EnsemblPlants:TraesCS3D01G087900.4	TIGR:cd05506	SEG:seg	:

Description

No Description!

Coordinates

chr3D:+:44882285..44888802

Molecular Weight (calculated)

79321.9 Da

IEP (calculated)

4.737

GRAVY (calculated)

-0.757

Length

716 amino acids

Sequence
(BLAST)

001: MTPTVLMEYR PQMQIKRGYD EIAYRGGAGY AETVGESGSP VRVDSEDSSA PKRKCISLNS DGFDVKREIF VPSKLSSSER RYLRKRFRAE LDSVRYLLKR
101: PEFLAIMPVT RAPGFSSSAA PRAKKVQRGS HVLRGAKGRF LPTKPRPETS TVLPEATIQK QCEAILKKLM TQKFSHIFNV PVDVEKLNIP DYNEIIKHPM
201: DLGTIKKKLD SGSYTSPFDF AADVRLTFNN AITYNPRGHA VHDMAIQLNK MFESRWKTVE KKLVSAATKP HVEVDRADSK RRKTPPVDRS DLSIDCVRPT
301: EIVKLKMTFE EKESFGNCLA SLSEDPELPG HIIDMLQQCI DNNTDQLGDE EIEIDIHALS DDILLELKKH VDKYLQERDH QQTKSEPSEN EAVNVSGLSH
401: SSTNPCKGGE PVEEDVDICG NASPILIEKD PQIRTSKCGS PSSSSSGSGS SSSDSDSGSD AESEPEKAGS PAKLVKGIEI PEQPAEQEKS DDVISPVDAN
501: NTTADVELRE LDNESKAAPE DTAADVELGE QDHESKAAPE GENAKSDRQV SPDKLLRAAL LRGRYADVIV KARGILCQGG DKQEELEKLQ KEEKERLLAE
601: GNAAMEARRA EAEAESKRKR DLEREKARQA LQEMERTVEI NDSVDPKDLE MLGTVTTEHI VSSVDETSPE HSQDGMPSFL PGSGSMLEKL GLFMKVDEEE
701: EEEEPCSKDA DEGEIN

Best Arabidopsis Sequence Match ( AT3G27260.4 )
(BLAST)

001: MVESAAFPGG YYRNTFEAPE ESEGSGSSAQ IDTEVTASEN SSTPARKCIM LNSNDEDPYG VQRQVISLYN MSQSERKDLI YRLKLELEQT KIVLKNAELQ
101: RMNPAAVSST SDRVGFSTGQ KISSRVSNSK KPSDFAVGSG KKVRHQNGTS RGWNRGTSGK FESSKETMTS TPNITLMKQC DTLLRKLWSH PHSWVFQAPV
201: DVVKLNIPDY LTTIKHPMDL GTVKKNLASG VYSSPHEFAA DVRLTFTNAM TYNPPGHDVH IMGDILSKLF EARWKTIKKK LPPCSMQTLP AVTLEPNDER
301: KAAISVPPAK KRKMASPVRE SVPEPVKPLM TEVERHRLGR QLESLLDELP AHIIDFLKKH NSNGGEIAED EIEIDIDVLS DEVLVTLRNL LDEYIQNKEA
401: KQTNVEPCEI ELINGSRPSN SSLQRGNEMA DEYVDGNEPP ISRSSSDSDS GSSEDQSDDA KPMVQGDSSK MPETANSEAQ RDENTRIDDL FVGSQSTGAL
501: EQMDICSQQK LSSDESDGQH EGNILETPAS SEKRYRAALL KNRFADIILK AREKPLPQNG IKGDPERLRK EREELVLQKK KEKARLQAEA EAAEDARRQA
601: EAEAAAEAAA EAKRKRELER EAARQALLKM EKTVEINENS RFLEDLEMLS SSAPEQLPSS AEETSPERPL DALGSFNLRG SNPLEQLGLY MKQDDDEEEP
701: EAPAVPNLAN DVEEGEID

Arabidopsis Description

GTE8Global transcription factor group E8 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.