Factsheet for Bra038624.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84396	Canola	nucleus	92.56	36.54
HORVU3Hr1G015760.1	Barley	nucleus	41.32	18.12
Bra025262.1-P	Field mustard	nucleus	40.08	17.93
AT5G63320.1	Thale cress	nucleus	77.69	17.72
Solyc03g111090.2.1	Tomato	nucleus	55.79	17.29
VIT_17s0000g01830.t01	Wine grape	nucleus	53.72	17.22
Bra035848.1-P	Field mustard	nucleus	83.88	17.04
PGSC0003DMT400039290	Potato	nucleus	54.13	16.67
Bra031004.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	24.38	16.62
Bra025948.1-P	Field mustard	mitochondrion	28.1	16.43
TraesCS3A01G087800.1	Wheat	plastid	41.32	16.39
Bra005311.1-P	Field mustard	cytosol, plastid	15.7	16.31
GSMUA_Achr8P08920_001	Banana	nucleus	43.8	16.31
KRH57199	Soybean	nucleus	49.59	16.24
KRH54219	Soybean	nucleus	52.48	16.12
Bra008074.1-P	Field mustard	nucleus, plastid	26.03	16.07
KRH63729	Soybean	nucleus	51.24	15.84
GSMUA_Achr10P...	Banana	nucleus	41.74	15.83
Bra016586.1-P	Field mustard	nucleus, plastid	27.27	15.0
Zm00001d017126_P001	Maize	nucleus	41.74	14.51
TraesCS6A01G214000.1	Wheat	nucleus	42.15	14.45
Os02t0601800-03	Rice	nucleus	42.56	14.43
TraesCS6D01G196600.3	Wheat	nucleus	41.74	14.37
TraesCS3D01G087900.4	Wheat	nucleus	41.74	14.11
GSMUA_Achr3P02670_001	Banana	nucleus	40.91	14.04
GSMUA_Achr8P01140_001	Banana	nucleus	43.39	13.98
EES07108	Sorghum	nucleus	40.91	13.92
TraesCS3B01G141400.2	Wheat	nucleus, plastid	40.91	13.88
TraesCS3D01G124100.1	Wheat	nucleus	40.91	13.88
TraesCS3B01G103200.2	Wheat	nucleus	40.91	13.85
HORVU6Hr1G054560.16	Barley	nucleus	40.91	13.85
Bra024402.1-P	Field mustard	nucleus, plastid	30.99	13.76
TraesCS6B01G244000.2	Wheat	plastid	40.91	13.75
GSMUA_Achr2P20970_001	Banana	nucleus	40.5	13.61
HORVU3Hr1G022660.1	Barley	nucleus	39.67	13.48
TraesCS3A01G122200.1	Wheat	nucleus	39.67	13.46
KXG24325	Sorghum	nucleus	39.26	13.42
GSMUA_Achr3P02660_001	Banana	plasma membrane	35.12	13.0
Zm00001d035167_P001	Maize	nucleus	40.08	12.8
Bra006068.1-P	Field mustard	nucleus	28.93	12.75
TraesCS7D01G309100.1	Wheat	nucleus	39.26	12.67
Bra039088.1-P	Field mustard	nucleus	33.88	12.6
TraesCS7B01G212400.2	Wheat	nucleus	38.84	12.53
TraesCS7A01G312700.2	Wheat	nucleus	38.84	12.53
HORVU7Hr1G074620.7	Barley	cytosol, mitochondrion, nucleus	39.26	12.2
Zm00001d049638_P009	Maize	nucleus	38.84	12.1
Bra005383.1-P	Field mustard	nucleus	18.59	11.69
Bra032431.1-P	Field mustard	nucleus	31.41	11.57
Bra022044.1-P	Field mustard	nucleus	22.73	10.48
Bra030643.1-P	Field mustard	nucleus	31.82	10.42
Bra015485.1-P	Field mustard	nucleus	30.99	10.01
Bra012810.1-P	Field mustard	cytosol	14.05	9.55
Bra034451.1-P	Field mustard	cytosol	15.7	7.2

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:35.1	EnsemblPlantsGene:Bra038624	EnsemblPlants:Bra038624.1	EnsemblPlants:Bra038624.1-P
InterPro:Bromodomain	InterPro:Bromodomain-like_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001487
InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M4FC08	InterPro:NET_dom	InterPro:NET_sf
PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880
PANTHER:PTHR22880:SF228	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI000253F254	SEG:seg	:

Description

AT5G63320 (E=5e-049) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: ATBET9 (Arabidopsis thaliana Bromodomain and Extraterminal Domain protein 9); DNA binding (TAIR:AT5G14270.1).

Coordinates

chrA06:-:14233716..14234883

Molecular Weight (calculated)

27236.1 Da

IEP (calculated)

4.553

GRAVY (calculated)

-0.554

Length

242 amino acids

Sequence
(BLAST)

001: MDLGTIRSRL REGEYSSPLE FAADVRLTFS NSMAYNPPGN QYHKMARDLS TYFESRWKII ERKILVVEPP VMSLTSSASL EFEVPCNVAL PRKKTAEVNE
101: GKLRVEPGKL VMTDGEEFPQ NIVDLLREQS GNVDQSGEVE IEIEIDTLSD ETLFMVRKFL DEYLRDKKKS QEKSEPCEME IVHDSGFSNS PLQPSKCHLL
201: IDEDVDIVGG NDPLVSRHPP FKIEKDIACR NSSSSSSSES GS

Best Arabidopsis Sequence Match ( AT5G63320.1 )
(BLAST)

0001: MGKARKHSRG RPSGFVPDYM QAVEPDEFVY SERMNSEASP PLKRRRFGLN GDNNGVSKEV LSLSKMSRSE RKNLVHKLKM ELQQVRDLSK KIASFSSDTV
0101: LLSPYNDHSC SDGPRRPPPE NFATFVGSQG KKRPPVRSDK QRNKKGPSRL NVPTSYTVAS VMKECETLLN RLWSHKSGWP FRTPVDPVML NIPDYFNVIK
0201: HPMDLGTIRS RLCKGEYSSP LDFAADVRLT FSNSIAYNPP GNQFHTMAQG ISKYFESGWK SIEKKIPMSK PPVIPLTSSA SLESEIPFEV APMRKKEAAM
0301: NDNKLRVEPA KLVMTDGEKK KLGQDLMALE EDFPQKIADL LREQSGSDGQ SGEGEIEIDI EALSDEILFM VRKLLDDYLR EKKKSMEKSE PCEMEIVHDS
0401: GFSNSPLQPS KGDLQIDEDV DIVGGNDPSV SSHPPLKIEK DAACRNNESS SSSSSSSESG SSSSDSDSCS SSGSETDSIK ASKPTSREEK KQPGVGIDKK
0501: EDDSNSEKIV VNDSLNELDQ LEHTVGEKST TMDAVVLVPD EETAPPERQI SPDSPDKRYR AAFLKNRFAD TIMKAREKAF TKGEKGDPEK LRIEREEFEK
0601: RLREEKERLQ AEAKAAEEAR RKAKAEAAEK ARREREQERE AARQALQKME KTVEINEGIR FMEDLQMLRA TGTEGDQLPT SMEVMSPKFS EDMLGLGSFK
0701: MESNSNPLEH LGLYMKMDED EDEEEDPPHF SQRKVEDNPF DRSEKQEHSP HRVEGEDQLV SGNEEPVSQE AHDNGDQEDG KPINPNEIER QLENMPEQES
0801: GVGDKEEQET EVVDMRKQEN EVVDMGVEEV HPLDRSEGRT LSPHRKERED PRASGNEESV SEKAQDYENQ RDEKINQSER EEQLENVLEQ ESSRDDDTGE
0901: QETEVVGVGK ELSLDKSEGQ TLSPHREEGE NQLDCGNEEL VSQKTQDNGN QEDEKSINKI EGEEQLANVP EQESRVTEKE EQETGVVDLG EQKSEVVEKG
1001: VEENEAVDNG EGVQGTEVSD KGGNETVVDG NGKVETEVVD KAGQKTDLVD QGEEDIDVEI D

Arabidopsis Description

GTE10NPX1 [Source:UniProtKB/TrEMBL;Acc:A0A178UIE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.