Factsheet for Bra016586.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96751	Canola	nucleus, plastid	81.82	98.36
Bra025948.1-P	Field mustard	mitochondrion	75.23	79.95
AT1G17790.1	Thale cress	nucleus, plastid	75.68	68.38
Bra031004.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	54.09	67.04
Bra008074.1-P	Field mustard	nucleus, plastid	57.5	64.54
GSMUA_Achr10P...	Banana	nucleus, plastid	40.68	40.04
GSMUA_Achr11P...	Banana	nucleus	36.36	37.83
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	43.86	37.55
Zm00001d008922_P001	Maize	plastid	40.68	36.53
Os01t0214300-01	Rice	cytosol, nucleus	13.64	36.14
TraesCS3D01G146600.1	Wheat	nucleus, plastid	40.23	34.98
TraesCS3B01G164100.1	Wheat	nucleus, plastid	40.45	34.9
TraesCS3A01G140500.1	Wheat	nucleus, plastid	40.23	34.71
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	23.86	33.76
EES02258	Sorghum	plastid	33.64	33.18
GSMUA_Achr1P11660_001	Banana	nucleus	38.41	32.94
VIT_19s0014g01650.t01	Wine grape	nucleus	42.73	31.49
Bra038624.1-P	Field mustard	nucleus	15.0	27.27
Bra024402.1-P	Field mustard	nucleus, plastid	32.95	26.61
Bra032431.1-P	Field mustard	nucleus	38.86	26.03
Os02t0250300-01	Rice	nucleus	38.64	25.91
TraesCS6D01G177700.1	Wheat	cytosol, plastid	37.05	25.67
HORVU6Hr1G045030.1	Barley	nucleus	36.82	25.59
HORVU6Hr1G045070.4	Barley	nucleus	36.82	25.47
Zm00001d016131_P006	Maize	nucleus	38.41	25.19
Bra006068.1-P	Field mustard	nucleus	30.91	24.77
OQU84709	Sorghum	nucleus	39.32	24.3
PGSC0003DMT400039787	Potato	nucleus	38.86	24.29
Solyc12g014170.1.1	Tomato	nucleus	38.64	24.25
Bra005311.1-P	Field mustard	cytosol, plastid	12.73	24.03
Bra030643.1-P	Field mustard	nucleus	38.86	23.14
Bra015485.1-P	Field mustard	nucleus	39.09	22.96
PGSC0003DMT400032373	Potato	nucleus	38.18	22.67
Solyc07g062660.2.1	Tomato	nucleus	36.59	21.41
Bra012810.1-P	Field mustard	cytosol	17.05	21.07
Bra005383.1-P	Field mustard	nucleus	18.41	21.04
Zm00001d053427_P007	Maize	nucleus	32.5	20.94
Zm00001d039369_P004	Maize	plastid	37.5	17.61
Bra025262.1-P	Field mustard	nucleus	21.14	17.19
Bra039088.1-P	Field mustard	nucleus	22.95	15.51
Bra022044.1-P	Field mustard	nucleus	18.18	15.24
Bra034451.1-P	Field mustard	cytosol	17.05	14.2
Bra035848.1-P	Field mustard	nucleus	22.5	8.31

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	EnsemblPlantsGene:Bra016586	EnsemblPlants:Bra016586.1	EnsemblPlants:Bra016586.1-P
InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M4DJA8
InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014
PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI00025454D1
SEG:seg	:	:	:	:	:

Description

AT1G73150 (E=1e-109) GTE3 | GTE3 (GLOBAL TRANSCRIPTION FACTOR GROUP E 3); DNA binding / histone binding

Coordinates

chrA08:+:19165292..19166872

Molecular Weight (calculated)

48544.9 Da

IEP (calculated)

4.867

GRAVY (calculated)

-0.752

Length

440 amino acids

Sequence
(BLAST)

001: MSSDHGGGGA SKKKNHQNRS KPMAGPRPNR SVPLPSEDDD YPMLKVSLSS ISKLEVRNLK RKLTAELDEV RSLMTRFDPQ PQSKKMKQTG NKKGTAQILK
101: SCNALLTKLM KHKDGWVFNV PVDAKGLGLH DYHSIVKEPM DLGTVKAKLG GGLYESPLDF AEDVRLTFNN AILYNPVGHE VHSMAKFLLN MFEEKWVSIE
201: VQFDNLHRKV KPTRDVALFS PPVVEALPAP PPPLLPPAVV EERTLERAEE SMTTPVEPET VTTSALEKPE EEEEEAPVDV RDLTMDEKRR LSEELQDLPY
301: DKLETVVQII KKSNPELSQQ DDEIELDIDS VDIQTLWELY RFVIGYKEGL SNKKEDQGFG SERDAESVHN SIQEPTILAT GTETSRANES GKAIRMSSPG
401: RQENNPGGSS SSNSSSSDTG SGSSDSDSDS SSGRGSDTGN

Best Arabidopsis Sequence Match ( AT1G17790.1 )
(BLAST)

001: MSSEHISGGG ASKTKKHKWS SSQNRPKPMG VSRQERSVPL VSPSNSFASE DDHHMLKISL SSISKLEVRN LKRKLKSELD EVRSLIKRFD PEANPGGSMA
101: KSGVVGRSKK VKTGNGGGKK SGHGADKGTV QIFKNCNSLL TKLMKHKSAW VFNVPVDAKG LGLHDYHNIV KEPMDLGTVK TKLGKSLYKS PLDFAEDVRL
201: TFNNAILYNP IGHDVYRFAE LLLNMFEDKW VSIEMQYDNL HRKFKPTRDI EFPAPAPSIA PIVEPLPAIV PSPSPSSPPP PPPPPVAAPV LENRTWEREE
301: SMTIPVEPEA VITAPEKAEE EEAPVNNRDL TLEEKRRLSE ELQDLPYDKL ETVVQIIKKS NPELSQKDDE IELDIDSLDI NTLWELYRFV TGYKESLSKK
401: NEAHGFGSER DAESVHNSIQ EPTTLVSGTT TSRVTESGKA IRTSSPARQE NNASGSSSSN SSSSDSGSCS SDTDSDSSSG RGSDNGN

Arabidopsis Description

GTE5Transcription factor GTE5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.