Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400032373 | Potato | nucleus | 92.42 | 93.79 |
| Solyc12g014170.1.1 | Tomato | nucleus | 52.53 | 56.35 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 30.19 | 50.78 |
| VIT_19s0014g01650.t01 | Wine grape | nucleus | 39.23 | 49.41 |
| GSMUA_Achr11P... | Banana | nucleus | 27.39 | 48.7 |
| Solyc10g008070.2.1 | Tomato | nucleus | 22.61 | 46.96 |
| GSMUA_Achr7P09350_001 | Banana | nucleus, plastid | 31.91 | 46.69 |
| EES02258 | Sorghum | plastid | 25.93 | 43.72 |
| Zm00001d008922_P001 | Maize | plastid | 28.46 | 43.67 |
| CDX82101 | Canola | nucleus | 10.51 | 43.17 |
| TraesCS3D01G146600.1 | Wheat | nucleus, plastid | 27.66 | 41.11 |
| TraesCS3A01G140500.1 | Wheat | nucleus, plastid | 27.66 | 40.78 |
| TraesCS3B01G164100.1 | Wheat | nucleus, plastid | 27.53 | 40.59 |
| CDX83890 | Canola | nucleus, plastid | 19.68 | 40.44 |
| CDX96751 | Canola | nucleus, plastid | 19.41 | 39.89 |
| CDY48040 | Canola | nucleus, plastid | 20.61 | 39.54 |
| Bra008074.1-P | Field mustard | nucleus, plastid | 20.61 | 39.54 |
| Bra025948.1-P | Field mustard | mitochondrion | 21.68 | 39.37 |
| Bra031004.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 18.48 | 39.15 |
| CDY26215 | Canola | mitochondrion | 21.54 | 39.13 |
| CDX82103 | Canola | plastid | 16.22 | 38.98 |
| HORVU6Hr1G045030.1 | Barley | nucleus | 32.71 | 38.86 |
| HORVU6Hr1G045070.4 | Barley | nucleus | 32.85 | 38.84 |
| AT1G73150.1 | Thale cress | plastid | 23.8 | 38.83 |
| CDY19175 | Canola | nucleus, plastid | 19.81 | 38.8 |
| CDY66497 | Canola | nucleus | 7.98 | 38.71 |
| TraesCS6D01G177700.1 | Wheat | cytosol, plastid | 32.58 | 38.58 |
| GSMUA_Achr1P11660_001 | Banana | nucleus | 26.2 | 38.4 |
| Zm00001d016131_P006 | Maize | nucleus | 34.04 | 38.15 |
| Os02t0250300-01 | Rice | nucleus | 33.24 | 38.11 |
| Os01t0214300-01 | Rice | cytosol, nucleus | 8.38 | 37.95 |
| AT1G17790.1 | Thale cress | nucleus, plastid | 23.94 | 36.96 |
| Bra016586.1-P | Field mustard | nucleus, plastid | 21.41 | 36.59 |
| OQU84709 | Sorghum | nucleus | 34.57 | 36.52 |
| CDY26219 | Canola | nucleus | 8.64 | 34.95 |
| Zm00001d053427_P007 | Maize | nucleus | 31.52 | 34.7 |
| CDY21732 | Canola | cytosol | 11.7 | 34.65 |
| CDX81848 | Canola | cytosol, nucleus, plastid | 10.77 | 29.45 |
| Solyc01g106280.2.1 | Tomato | nucleus | 21.54 | 26.91 |
| Solyc09g015660.2.1 | Tomato | cytosol | 12.63 | 26.32 |
| Solyc02g091660.2.1 | Tomato | nucleus | 18.48 | 25.98 |
| Solyc09g090370.2.1 | Tomato | nucleus | 11.7 | 25.43 |
| Zm00001d039369_P004 | Maize | plastid | 27.26 | 21.88 |
| Solyc03g111090.2.1 | Tomato | nucleus | 20.08 | 19.33 |
| Solyc02g071510.2.1 | Tomato | nucleus | 12.5 | 16.01 |
| Solyc02g093880.2.1 | Tomato | nucleus | 14.89 | 15.45 |
Protein Annotations
| Gene3D:1.20.1270.220 | Gene3D:1.20.920.10 | MapMan:15.5.54 | InterPro:Bromodomain | InterPro:Bromodomain-like_sf | InterPro:Bromodomain_CS |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GTE_bromo | InterPro:IPR001487 |
| InterPro:IPR027353 | InterPro:IPR036427 | InterPro:IPR038336 | UniProt:K4CGU9 | InterPro:NET_dom | InterPro:NET_sf |
| PFAM:PF00439 | PFAM:PF17035 | PRINTS:PR00503 | ScanProsite:PS00633 | PFscan:PS50014 | PFscan:PS51525 |
| PANTHER:PTHR22880 | PANTHER:PTHR22880:SF147 | SMART:SM00297 | SUPFAM:SSF47370 | EnsemblPlantsGene:Solyc07g062660.2 | EnsemblPlants:Solyc07g062660.2.1 |
| UniParc:UPI000276B848 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7:-:65342137..65347687
Molecular Weight (calculated)
83176.1 Da
IEP (calculated)
7.883
GRAVY (calculated)
-0.786
Length
752 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDANDLNS RNRLRWGDNH KVYTRKRRRT LENTSTDVAP AATAAVSSAA AAPEVISNSG RDTNENDEVP EPSLQTQFRD CSIVKGVIGG EQVALSNGGE
101: VRELTEDSCG RDEPRDGGAG LLVEHKAGES ADGSFGRDVP EVGRGIDTGA AAASSGGEVP EGSSGSQPAM QNHRDEPQSD NLEMENGYGK PVISRIQDRI
201: RINLTGVRSS DEIRELGMSL ESELDQVRGL VKQLEAKQLQ LTTYRTSING GNINAGSVTT FPGSINAGSI TTVPGGSISS YSHTQYMDDG VIKNRSLARM
301: NSEVRSAGHI GSRPFQRPNF LIVENSNGSS DFVEKEKRTP KANQFYRNSE FLLGKDRLPP ESNKRLKTNG SGKKHSANSE NGFGLDKHRL QVFRNCSSLL
401: QRLMKHKHGW VFNEPVNVKS LGLHDYHDII KHPMDLGTIK TRLSDDWYKS PMEFAEDVRL VFRNAMTYNP RGQDVHVMAE QLSEIFEERW AVIEAEYHSD
501: WRYQMYHDVG APTPTSRMTS YPPPFLHTPV SSRSLAPHAR QLHPLDRSES MTRPVNPKMK TSNIAHVTRT PVPKKPKAKD LNKRDMTYEE KQKLSTNLQN
601: LPSEKLDAIV QIIKKRNTAL SQDNDEIEVD IDSVDAETLW ELDRFVTNFK KSFSKYKRKA ELLRAREGAA QAARNVNPTS MVADALKENG TGEKDTAPAT
701: LEGGRPADSA SSSSSSSSSD SGSSSSVIVL QHLDQRRRNH PGHDKLLMKF GL
101: VRELTEDSCG RDEPRDGGAG LLVEHKAGES ADGSFGRDVP EVGRGIDTGA AAASSGGEVP EGSSGSQPAM QNHRDEPQSD NLEMENGYGK PVISRIQDRI
201: RINLTGVRSS DEIRELGMSL ESELDQVRGL VKQLEAKQLQ LTTYRTSING GNINAGSVTT FPGSINAGSI TTVPGGSISS YSHTQYMDDG VIKNRSLARM
301: NSEVRSAGHI GSRPFQRPNF LIVENSNGSS DFVEKEKRTP KANQFYRNSE FLLGKDRLPP ESNKRLKTNG SGKKHSANSE NGFGLDKHRL QVFRNCSSLL
401: QRLMKHKHGW VFNEPVNVKS LGLHDYHDII KHPMDLGTIK TRLSDDWYKS PMEFAEDVRL VFRNAMTYNP RGQDVHVMAE QLSEIFEERW AVIEAEYHSD
501: WRYQMYHDVG APTPTSRMTS YPPPFLHTPV SSRSLAPHAR QLHPLDRSES MTRPVNPKMK TSNIAHVTRT PVPKKPKAKD LNKRDMTYEE KQKLSTNLQN
601: LPSEKLDAIV QIIKKRNTAL SQDNDEIEVD IDSVDAETLW ELDRFVTNFK KSFSKYKRKA ELLRAREGAA QAARNVNPTS MVADALKENG TGEKDTAPAT
701: LEGGRPADSA SSSSSSSSSD SGSSSSVIVL QHLDQRRRNH PGHDKLLMKF GL
001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT
Arabidopsis Description
GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.