Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21732 | Canola | cytosol | 62.18 | 67.32 |
| CDY66497 | Canola | nucleus | 36.73 | 65.16 |
| CDY26219 | Canola | nucleus | 41.09 | 60.75 |
| CDY19175 | Canola | nucleus, plastid | 56.73 | 40.62 |
| CDX83890 | Canola | nucleus, plastid | 53.45 | 40.16 |
| CDX96751 | Canola | nucleus, plastid | 52.73 | 39.62 |
| CDY26215 | Canola | mitochondrion | 57.45 | 38.16 |
| CDX82103 | Canola | plastid | 40.0 | 35.14 |
| CDX82101 | Canola | nucleus | 21.82 | 32.79 |
| CDY48040 | Canola | nucleus, plastid | 45.09 | 31.63 |
| Os01t0214300-01 | Rice | cytosol, nucleus | 15.64 | 25.9 |
| CDX78390 | Canola | nucleus | 17.45 | 20.08 |
| CDX70356 | Canola | nucleus, plastid | 17.45 | 19.43 |
| CDY15568 | Canola | nucleus | 22.18 | 19.24 |
| GSMUA_Achr11P... | Banana | nucleus | 26.18 | 17.02 |
| Zm00001d008922_P001 | Maize | plastid | 28.36 | 15.92 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 25.82 | 15.88 |
| EES02258 | Sorghum | plastid | 25.45 | 15.7 |
| TraesCS3D01G146600.1 | Wheat | nucleus, plastid | 28.36 | 15.41 |
| GSMUA_Achr7P09350_001 | Banana | nucleus, plastid | 28.73 | 15.37 |
| TraesCS3A01G140500.1 | Wheat | nucleus, plastid | 28.36 | 15.29 |
| TraesCS3B01G164100.1 | Wheat | nucleus, plastid | 28.0 | 15.1 |
| PGSC0003DMT400061991 | Potato | cytoskeleton, cytosol, nucleus | 16.73 | 14.79 |
| CDY08771 | Canola | nucleus | 18.55 | 14.41 |
| GSMUA_Achr1P11660_001 | Banana | nucleus | 26.55 | 14.23 |
| VIT_19s0014g01650.t01 | Wine grape | nucleus | 28.73 | 13.23 |
| CDY65656 | Canola | cytosol | 9.45 | 12.56 |
| TraesCS6D01G177700.1 | Wheat | cytosol, plastid | 28.36 | 12.28 |
| HORVU6Hr1G045030.1 | Barley | nucleus | 28.0 | 12.16 |
| HORVU6Hr1G045070.4 | Barley | nucleus | 28.0 | 12.11 |
| Os02t0250300-01 | Rice | nucleus | 28.73 | 12.04 |
| Zm00001d016131_P006 | Maize | nucleus | 28.0 | 11.48 |
| CDY65645 | Canola | nucleus, plastid | 21.09 | 11.39 |
| OQU84709 | Sorghum | nucleus | 29.45 | 11.38 |
| CDY09981 | Canola | nucleus | 26.18 | 11.27 |
| CDX86532 | Canola | nucleus | 28.73 | 11.21 |
| CDY06203 | Canola | nucleus | 26.18 | 11.18 |
| PGSC0003DMT400032373 | Potato | nucleus | 29.45 | 10.93 |
| Solyc12g014170.1.1 | Tomato | nucleus | 27.64 | 10.84 |
| Solyc07g062660.2.1 | Tomato | nucleus | 29.45 | 10.77 |
| PGSC0003DMT400039787 | Potato | nucleus | 26.91 | 10.51 |
| Zm00001d053427_P007 | Maize | nucleus | 25.82 | 10.4 |
| CDY31648 | Canola | nucleus | 12.73 | 8.24 |
| CDX84278 | Canola | nucleus | 12.73 | 7.99 |
| Zm00001d039369_P004 | Maize | plastid | 26.91 | 7.9 |
| CDX90608 | Canola | cytosol | 9.82 | 7.58 |
| CDY29075 | Canola | cytoskeleton, cytosol, nucleus | 9.82 | 7.42 |
| CDY13699 | Canola | nucleus | 10.91 | 6.56 |
| CDY20057 | Canola | nucleus | 14.91 | 6.36 |
| CDX83673 | Canola | nucleus | 10.91 | 6.02 |
| CDY43984 | Canola | endoplasmic reticulum | 6.55 | 4.12 |
| CDX84396 | Canola | nucleus | 8.36 | 3.75 |
| CDY72432 | Canola | cytosol | 6.18 | 3.37 |
| CDX70357 | Canola | plastid | 4.73 | 3.31 |
| CDY68605 | Canola | cytosol | 6.55 | 3.28 |
| CDY16729 | Canola | nucleus | 10.91 | 2.63 |
| CDY48139 | Canola | nucleus | 7.27 | 2.26 |
Protein Annotations
| EnsemblPlants:CDX81848 | EnsemblPlantsGene:GSBRNA2T00136794001 | Gene3D:1.20.1270.220 | InterPro:IPR027353 | InterPro:IPR038336 | InterPro:NET_dom |
| InterPro:NET_sf | PANTHER:PTHR22880 | PANTHER:PTHR22880:SF147 | PFAM:PF17035 | PFscan:PS51525 | ProteinID:CDX81848 |
| ProteinID:CDX81848.1 | SEG:seg | UniParc:UPI0004EEA719 | MapMan:35.1 | : | : |
Description
BnaC08g37530D
Coordinates
chrLK031826:-:1098413..1103065
Molecular Weight (calculated)
30840.3 Da
IEP (calculated)
5.160
GRAVY (calculated)
-0.615
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAARHDRSV NVPLVSTSHS FASEDEDPML KVVSLSSTSK PEVKALKLKL ISEVDKVRIV ITRFDPQGGN KKIETVKKSG HGVQLDSLLR NVKPTRDRKI
101: APIVDPLPAN VGEEEEANVD NRDLTLDEKW RLIEELQDLP CDKLETVVQI IKKSNPELSQ QDDEIELDID CLDIETLWEL YRFVTGYKES LSNKKEDQES
201: GSERDAESAH SIIQEPAIFA STTLATGTET SRVNESGKVL AHRGPTIVFI LTQKKRDNDY SSSSNSSRIH IKDKH
101: APIVDPLPAN VGEEEEANVD NRDLTLDEKW RLIEELQDLP CDKLETVVQI IKKSNPELSQ QDDEIELDID CLDIETLWEL YRFVTGYKES LSNKKEDQES
201: GSERDAESAH SIIQEPAIFA STTLATGTET SRVNESGKVL AHRGPTIVFI LTQKKRDNDY SSSSNSSRIH IKDKH
001: MSSEHISGGG ASKTKKHKWS SSQNRPKPMG VSRQERSVPL VSPSNSFASE DDHHMLKISL SSISKLEVRN LKRKLKSELD EVRSLIKRFD PEANPGGSMA
101: KSGVVGRSKK VKTGNGGGKK SGHGADKGTV QIFKNCNSLL TKLMKHKSAW VFNVPVDAKG LGLHDYHNIV KEPMDLGTVK TKLGKSLYKS PLDFAEDVRL
201: TFNNAILYNP IGHDVYRFAE LLLNMFEDKW VSIEMQYDNL HRKFKPTRDI EFPAPAPSIA PIVEPLPAIV PSPSPSSPPP PPPPPVAAPV LENRTWEREE
301: SMTIPVEPEA VITAPEKAEE EEAPVNNRDL TLEEKRRLSE ELQDLPYDKL ETVVQIIKKS NPELSQKDDE IELDIDSLDI NTLWELYRFV TGYKESLSKK
401: NEAHGFGSER DAESVHNSIQ EPTTLVSGTT TSRVTESGKA IRTSSPARQE NNASGSSSSN SSSSDSGSCS SDTDSDSSSG RGSDNGN
101: KSGVVGRSKK VKTGNGGGKK SGHGADKGTV QIFKNCNSLL TKLMKHKSAW VFNVPVDAKG LGLHDYHNIV KEPMDLGTVK TKLGKSLYKS PLDFAEDVRL
201: TFNNAILYNP IGHDVYRFAE LLLNMFEDKW VSIEMQYDNL HRKFKPTRDI EFPAPAPSIA PIVEPLPAIV PSPSPSSPPP PPPPPVAAPV LENRTWEREE
301: SMTIPVEPEA VITAPEKAEE EEAPVNNRDL TLEEKRRLSE ELQDLPYDKL ETVVQIIKKS NPELSQKDDE IELDIDSLDI NTLWELYRFV TGYKESLSKK
401: NEAHGFGSER DAESVHNSIQ EPTTLVSGTT TSRVTESGKA IRTSSPARQE NNASGSSSSN SSSSDSGSCS SDTDSDSSSG RGSDNGN
Arabidopsis Description
GTE5Transcription factor GTE5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.