CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84366
CDY00336

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65630.1	CDX84366	AT5G62920.1	18642946
AT5G65630.1	CDY00336	AT5G62920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78390	Canola	nucleus	46.33	68.62
CDX70356	Canola	nucleus, plastid	46.61	66.8
Bra024402.1-P	Field mustard	nucleus, plastid	97.74	63.49
CDY65645	Canola	nucleus, plastid	89.55	62.28
AT5G65630.1	Thale cress	nucleus	90.4	54.24
CDY65656	Canola	cytosol	26.27	44.93
CDY15568	Canola	nucleus	38.7	43.22
CDY66497	Canola	nucleus	16.38	37.42
OQU82367	Sorghum	nucleus	31.36	36.76
Zm00001d046528_P001	Maize	cytosol	14.97	35.33
KRH10646	Soybean	nucleus	52.54	35.16
KRH10648	Soybean	nucleus	52.26	34.51
KRH21702	Soybean	nucleus	51.69	34.46
Os04t0622800-00	Rice	cytosol	30.23	34.41
VIT_03s0097g00570.t01	Wine grape	nucleus	52.82	33.88
CDX96751	Canola	nucleus, plastid	33.05	31.97
CDY26219	Canola	nucleus	16.67	31.72
CDX82103	Canola	plastid	27.97	31.63
CDX83890	Canola	nucleus, plastid	32.49	31.42
GSMUA_Achr3P00480_001	Banana	nucleus	45.48	30.84
CDX82101	Canola	nucleus	15.82	30.6
GSMUA_Achr1P15650_001	Banana	nucleus	42.37	30.49
Solyc02g091660.2.1	Tomato	nucleus	45.76	30.28
CDY19175	Canola	nucleus, plastid	32.77	30.21
CDY48040	Canola	nucleus, plastid	32.2	29.08
PGSC0003DMT400078795	Potato	nucleus	48.02	28.72
CDY26215	Canola	mitochondrion	33.33	28.5
Os04t0623100-01	Rice	cytosol, mitochondrion, nucleus, plastid	36.44	28.29
Zm00001d002267_P001	Maize	plastid	35.59	27.94
Os08t0192800-01	Rice	nucleus	37.01	27.23
TraesCS2B01G489500.1	Wheat	plastid	35.31	27.0
TraesCS2A01G466700.3	Wheat	cytosol, mitochondrion, nucleus, plastid	35.59	26.98
TraesCS2D01G466700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	35.59	26.81
Zm00001d049400_P001	Maize	plastid	35.59	26.03
KXG24660	Sorghum	plastid	35.88	25.81
Zm00001d026333_P001	Maize	cytosol	34.18	25.69
Zm00001d024251_P001	Maize	cytosol	33.9	24.64
CDY21732	Canola	cytosol	16.95	23.62
CDX70357	Canola	plastid	24.58	22.14
CDY09981	Canola	nucleus	37.85	20.97
CDY06203	Canola	nucleus	37.85	20.81
CDX86532	Canola	nucleus	38.42	19.29
CDX81848	Canola	cytosol, nucleus, plastid	14.41	18.55
CDY31648	Canola	nucleus	19.49	16.24
CDX84278	Canola	nucleus	19.49	15.75
CDX90608	Canola	cytosol	15.82	15.73
CDY29075	Canola	cytoskeleton, cytosol, nucleus	16.1	15.66
CDX84396	Canola	nucleus	25.14	14.52
CDY20057	Canola	nucleus	25.42	13.95
CDY43984	Canola	endoplasmic reticulum	15.25	12.36
CDY72432	Canola	cytosol	15.54	10.89
CDY13699	Canola	nucleus	13.28	10.28
CDY68605	Canola	cytosol	15.54	10.02
CDX83673	Canola	nucleus	13.28	9.44
CDY16729	Canola	nucleus	29.94	9.28
CDY48139	Canola	nucleus	21.47	8.6

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	UniProt:A0A078F5T0	InterPro:Bromodomain	InterPro:Bromodomain-like_sf
EnsemblPlants:CDY08771	ProteinID:CDY08771	ProteinID:CDY08771.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00000706001	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	InterPro:NET_dom
InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525
PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0004EF3AA7	SEG:seg

Description

BnaA06g24530DBnaA06g24530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5T0]

Coordinates

chrLK031989:+:312313..314016

Molecular Weight (calculated)

38741.6 Da

IEP (calculated)

5.343

GRAVY (calculated)

-0.586

Length

354 amino acids

Sequence
(BLAST)

001: MKHKWAWVFN TPVDVVGLGL HDYHLIVKKP MDLGTVKLNL EKGFYVSPLD FATDVRLTFR NAMAYNPKGQ DVYFMAEKLL DQFDVMFNPA FKKFEAQLVK
101: LTGSTSRSEP VVKQRQWSQS PVEGNVRRGT EQISIAKKLD SVKPLEPTLS PPQLPKPKAK DPNKRLMTME EKSKLGMNLQ DLPPEKLGQL VQILRKRNGH
201: LAQDGDEIEL DIEAVDNETL WELDRFVTNY KKMASKIKRQ GFILNVSTPP AARHMASEAE MGSAEKRTRK GDAGEEDVDI GEDIPIEDYP SVEIERDGTA
301: VAAAASSGSS SSGSSSSSSG SSSSDSGSGG SSSGSDSDAD SVQSPFVEAK EAQG

Best Arabidopsis Sequence Match ( AT5G10550.1 )
(BLAST)

001: MAPAVLANLN EPLFLGQCGA VFMRKYTNQP LSGDINNPLF NPNPNPNSIS AYGNNSSKHF DDSSAYGDYV SFDLDGYTSN QLRELKKRLN SELEEVRFLR
101: ERIESGTFVS GSVYTTQARS FAGETNDVGV KKTKTKKKKI GHGQKRSNPF ATDEPSLKRH VALDLMSEKV LKSMMTTCGQ ILVKLMKHKW SWVFLNPVDV
201: VGLGLHDYHR IVDKPMDLGT VKMNLEKGLY RSPIDFASDV RLTFTNAMSY NPKGQDVYLM AEKLLSQFDV WFNPTLKRFE AQEVKVMGSS SRPGPEDNQR
301: VWNQNNVAEN ARKGPEQISI AKKLDSVKPL LPTLPPPPVI EITRDPSPPP SPVQPPPPPS PPPQPVNQVE ASLEVRETNK GRKGKLPKPK AKDPNKREMT
401: MDEKGKLGVN LQELPPEKLG QLIQILRKRT RDLPQDGDEI ELDIEALDNE TLWELDRFVT NYRKMASKIK RQGFIQNVST PPRNMPPVTE MGSAEKRGRK
501: GGEAGEEDVD IGEDIPVEDY PSVEIERDGT AAAASGGSSS SGSFSSSGSS SSSDSESGSS SGSDSDADSV QSPFVEAKEA P

Arabidopsis Description

GTE2Transcription factor GTE2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.