Factsheet for GSMUA_Achr1P15650_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P00480_001	Banana	nucleus	70.94	66.86
CDY08771	Canola	nucleus	30.49	42.37
VIT_03s0097g00570.t01	Wine grape	nucleus	46.34	41.3
CDX78390	Canola	nucleus	19.31	39.75
KRH21702	Soybean	nucleus	41.87	38.79
KRH10646	Soybean	nucleus	41.67	38.75
OQU82367	Sorghum	nucleus	23.78	38.74
Zm00001d046528_P001	Maize	cytosol	11.79	38.67
CDX70356	Canola	nucleus, plastid	19.31	38.46
KRH10648	Soybean	nucleus	41.87	38.43
Os04t0622800-00	Rice	cytosol	24.19	38.26
Zm00001d002267_P001	Maize	plastid	34.55	37.69
CDY65645	Canola	nucleus, plastid	38.82	37.52
Os04t0623100-01	Rice	cytosol, mitochondrion, nucleus, plastid	34.76	37.5
Os08t0192800-01	Rice	nucleus	36.18	37.01
TraesCS2B01G489500.1	Wheat	plastid	34.55	36.72
TraesCS2A01G466700.3	Wheat	cytosol, mitochondrion, nucleus, plastid	34.76	36.62
TraesCS2D01G466700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	34.96	36.6
Solyc01g106280.2.1	Tomato	nucleus	44.72	36.54
PGSC0003DMT400008041	Potato	nucleus	44.51	36.38
Bra024402.1-P	Field mustard	nucleus, plastid	39.43	35.6
Zm00001d026333_P001	Maize	cytosol	33.74	35.24
GSMUA_Achr10P...	Banana	nucleus, plastid	31.91	35.12
Zm00001d049400_P001	Maize	plastid	34.35	34.92
KXG24660	Sorghum	plastid	34.76	34.76
AT5G10550.1	Thale cress	nucleus	40.24	34.08
Bra006068.1-P	Field mustard	nucleus	38.01	34.06
AT5G65630.1	Thale cress	nucleus	40.65	33.9
Zm00001d024251_P001	Maize	cytosol	33.13	33.47
CDY65656	Canola	cytosol	14.02	33.33
GSMUA_Achr11P...	Banana	nucleus	27.85	32.39
PGSC0003DMT400078795	Potato	nucleus	36.99	30.74
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	31.91	30.54
Bra005311.1-P	Field mustard	cytosol, plastid	14.43	30.47
Solyc02g091660.2.1	Tomato	nucleus	32.11	29.53
GSMUA_Achr1P11660_001	Banana	nucleus	30.08	28.85
CDX70357	Canola	plastid	21.34	26.72
GSMUA_Achr8P08920_001	Banana	nucleus	26.42	20.0
GSMUA_Achr10P...	Banana	nucleus	25.81	19.91
GSMUA_Achr8P29340_001	Banana	nucleus	15.65	19.69
GSMUA_Achr8P01140_001	Banana	nucleus	27.44	17.98
GSMUA_Achr8P34430_001	Banana	nucleus	15.65	17.91
GSMUA_Achr3P02660_001	Banana	plasma membrane	21.95	16.51
GSMUA_Achr2P20970_001	Banana	nucleus	23.98	16.39
GSMUA_Achr3P02670_001	Banana	nucleus	23.37	16.31
GSMUA_Achr4P27780_001	Banana	nucleus	13.62	9.94

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr1G15650_001	EnsemblPlants:GSMUA_Achr1P15650_001	EnsemblPlants:GSMUA_Achr1T15650_001
InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M0S073	InterPro:NET_dom
InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525
PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI00029635CC	SEG:seg

Description

Putative bromodomain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G15650_001]

Coordinates

chr1:+:11728809..11731059

Molecular Weight (calculated)

53950.7 Da

IEP (calculated)

6.334

GRAVY (calculated)

-0.638

Length

492 amino acids

Sequence
(BLAST)

001: MASALLASSN EPCWGEPKVY MRENPISNPN PRPCPNLFPS GHAGGRADQF RAMDLEEVPP ATSAPAVSDN SSSFNRRPTG LNQRGNPGAG VGGNYVTFSI
101: STCSKMELRE LKRRLVFELD QVQSLMSRIQ VSGDKATLPV VSPRSPKLPE LEKLLAAMMK KCGHILSKLM KHKKSVWFNS PVDVVGMGLH DYHQIIKSPM
201: DLGTVKKKLN DGLYPSPLEF ASDIRLTFNN ALLYNPKGHE VHKLADQFLR HFEGLFRPVY QTYEKQRSTM KREENQLQPL QQQSNVVRTT PGKLPKPKAK
301: DPDKRPMSFH EKHRLSEGLQ SLPPERMAHV LHIVRKGNVD AMQSGDEIEL DIDALDTETL WALDRFLCNC KKLMSKMKRQ EAIASGLLSA GHSVVAAPAL
401: IPDEGGGGGE RSPVFDDETP EAVAAKKSKK GDTAEEDVDI GDELPAITYP SLEIQKDTGN DSSSSSSGSD SSSASDSDSE SSSDGDSDDN ED

Best Arabidopsis Sequence Match ( AT1G17790.1 )
(BLAST)

001: MSSEHISGGG ASKTKKHKWS SSQNRPKPMG VSRQERSVPL VSPSNSFASE DDHHMLKISL SSISKLEVRN LKRKLKSELD EVRSLIKRFD PEANPGGSMA
101: KSGVVGRSKK VKTGNGGGKK SGHGADKGTV QIFKNCNSLL TKLMKHKSAW VFNVPVDAKG LGLHDYHNIV KEPMDLGTVK TKLGKSLYKS PLDFAEDVRL
201: TFNNAILYNP IGHDVYRFAE LLLNMFEDKW VSIEMQYDNL HRKFKPTRDI EFPAPAPSIA PIVEPLPAIV PSPSPSSPPP PPPPPVAAPV LENRTWEREE
301: SMTIPVEPEA VITAPEKAEE EEAPVNNRDL TLEEKRRLSE ELQDLPYDKL ETVVQIIKKS NPELSQKDDE IELDIDSLDI NTLWELYRFV TGYKESLSKK
401: NEAHGFGSER DAESVHNSIQ EPTTLVSGTT TSRVTESGKA IRTSSPARQE NNASGSSSSN SSSSDSGSCS SDTDSDSSSG RGSDNGN

Arabidopsis Description

GTE5Transcription factor GTE5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.