Factsheet for Os08t0192800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24660	Sorghum	plastid	72.35	70.73
Zm00001d049400_P001	Maize	plastid	70.89	70.45
Zm00001d024251_P001	Maize	cytosol	68.81	67.97
Os04t0622800-00	Rice	cytosol	36.17	55.95
Os04t0623100-01	Rice	cytosol, mitochondrion, nucleus, plastid	52.6	55.48
CDY08771	Canola	nucleus	27.23	37.01
GSMUA_Achr1P15650_001	Banana	nucleus	37.01	36.18
GSMUA_Achr3P00480_001	Banana	nucleus	38.88	35.82
CDX70356	Canola	nucleus, plastid	18.3	35.63
CDX78390	Canola	nucleus	17.67	35.56
KRH21702	Soybean	nucleus	37.21	33.71
VIT_03s0097g00570.t01	Wine grape	nucleus	38.67	33.7
KRH10646	Soybean	nucleus	36.8	33.46
KRH10648	Soybean	nucleus	37.21	33.4
CDY65645	Canola	nucleus, plastid	34.1	32.22
Os01t0214300-01	Rice	cytosol, nucleus	10.6	30.72
Bra024402.1-P	Field mustard	nucleus, plastid	34.51	30.46
CDY65656	Canola	cytosol	13.1	30.43
Os01t0648700-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	14.97	30.25
PGSC0003DMT400008041	Potato	nucleus	37.21	29.73
Solyc01g106280.2.1	Tomato	nucleus	37.01	29.57
Bra006068.1-P	Field mustard	nucleus	32.85	28.78
Bra005311.1-P	Field mustard	cytosol, plastid	13.72	28.33
AT5G10550.1	Thale cress	nucleus	33.89	28.06
AT5G65630.1	Thale cress	nucleus	34.3	27.97
PGSC0003DMT400078795	Potato	nucleus	34.3	27.87
Solyc02g091660.2.1	Tomato	nucleus	30.56	27.48
Os02t0250300-01	Rice	nucleus	31.6	23.17
CDX70357	Canola	plastid	17.05	20.87
Os06t0138000-01	Rice	cytosol, nucleus	5.2	20.16
Os02t0601800-03	Rice	nucleus	26.4	17.79
Os07t0507700-01	Rice	nucleus	14.55	11.65
Os08t0127300-01	Rice	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	EntrezGene:4344864	EMBL:AK059490	EMBL:AK101678
EMBL:AK120613	ProteinID:BAD05604.1	ProteinID:BAF23091.1	ProteinID:BAT04187.1	InterPro:Bromodomain	InterPro:Bromodomain-like_sf
ProteinID:EEE68184.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001487	InterPro:IPR027353
InterPro:IPR036427	InterPro:IPR038336	InterPro:NET_dom	InterPro:NET_sf	EnsemblPlantsGene:Os08g0192800	EnsemblPlants:Os08t0192800-01
PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880
PANTHER:PTHR22880:SF162	UniProt:Q6Z1C1	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI000022F2A3	RefSeq:XP_015651087.1
SEG:seg	:	:	:	:	:

Description

Bromodomain containing protein. (Os08t0192800-01)

Coordinates

chr8:+:5418272..5420390

Molecular Weight (calculated)

53641.0 Da

IEP (calculated)

6.634

GRAVY (calculated)

-0.788

Length

481 amino acids

Sequence
(BLAST)

001: MTSAVLAGRN EVHHHHHHHW ADARVPLMPK HATNPNPRRH HRPSPSIPPP PPPQRPPAAT VAPSVPDPSP SGHVTIRPSE LSRREAQVLR ARLTGELSRV
101: RALLSDIDGW EARRRRPAEP PRQRGHVSPP PALQAAMRKR CTQILTRLRK QKISVWFNSP VDVERLKLHD YHAIIRNPMD LGTVKENLAF GRYPSHEAFA
201: TDVRLTFSNA LRYNPADHHV HRYASNLLAT FEGLYKEALS WFEQECQRLE PPMPLALPPP PQPPVPMPMQ APPRIGGGGR RPKPKAREPN KREMSDEEKH
301: KLRVEIGNLP EEKMGNVLQI VQKRNTDPAL MGEVVELDFD EMDVETLWEL DRFVVNCKKA LSKSRRTVAM NGDAVDATAI VPTEDDTVQV NVHHQPSVVE
401: IGDSENDTPE KRVSEVDMVD EYVDIGDEMP TANYQSVEIE RDAQVASSSS GSDSGSSASS DSDSRSSGDS DSDGDDAQSP D

Best Arabidopsis Sequence Match ( AT1G06230.2 )
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Arabidopsis Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.