Factsheet for PGSC0003DMT400008041

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g106280.2.1	Tomato	nucleus	96.84	96.84
VIT_03s0097g00570.t01	Wine grape	nucleus	55.15	60.14
KRH10646	Soybean	nucleus	51.99	59.17
KRH21702	Soybean	nucleus	50.33	57.06
KRH10648	Soybean	nucleus	50.66	56.9
GSMUA_Achr3P00480_001	Banana	nucleus	40.2	46.36
GSMUA_Achr1P15650_001	Banana	nucleus	36.38	44.51
Os04t0622800-00	Rice	cytosol	21.43	41.48
OQU82367	Sorghum	nucleus	20.1	40.07
Zm00001d046528_P001	Maize	cytosol	9.97	40.0
TraesCS2A01G466700.3	Wheat	cytosol, mitochondrion, nucleus, plastid	30.23	38.97
Zm00001d002267_P001	Maize	plastid	28.9	38.58
TraesCS2B01G489500.1	Wheat	plastid	29.57	38.44
TraesCS2D01G466700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	29.9	38.3
Os04t0623100-01	Rice	cytosol, mitochondrion, nucleus, plastid	28.9	38.16
Os08t0192800-01	Rice	nucleus	29.73	37.21
Zm00001d049400_P001	Maize	plastid	28.74	35.74
KXG24660	Sorghum	plastid	28.9	35.37
Zm00001d026333_P001	Maize	cytosol	27.57	35.24
PGSC0003DMT400078795	Potato	nucleus	34.55	35.14
Zm00001d024251_P001	Maize	cytosol	26.91	33.26
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	16.61	32.15
PGSC0003DMT400027387	Potato	nucleus	28.57	29.86
PGSC0003DMT400061998	Potato	cytosol	5.65	29.06
PGSC0003DMT400039787	Potato	nucleus	27.57	23.58
PGSC0003DMT400032373	Potato	nucleus	27.74	22.54
PGSC0003DMT400044321	Potato	nucleus	13.12	20.95
PGSC0003DMT400039290	Potato	nucleus	25.75	19.72
PGSC0003DMT400052108	Potato	nucleus	20.6	17.01
PGSC0003DMT400018643	Potato	nucleus	17.11	17.0

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	EMBL:AJ504728	InterPro:Bromodomain	InterPro:Bromodomain-like_sf
ProteinID:CAD43283	ProteinID:CAD43283.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M0ZTY5	InterPro:NET_dom
InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	EnsemblPlantsGene:PGSC0003DMG400003108	PGSC:PGSC0003DMG400003108	EnsemblPlants:PGSC0003DMT400008041
PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297
SUPFAM:SSF47370	UniParc:UPI000295FAD8	SEG:seg	:	:	:

Description

Bromodomain-containing RNA-binding protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400003108]

Coordinates

chr1:-:82934357..82937627

Molecular Weight (calculated)

65553.3 Da

IEP (calculated)

8.792

GRAVY (calculated)

-0.924

Length

602 amino acids

Sequence
(BLAST)

001: MASAVLASRN ESSWAQSGGA GGGFMGKTPF SHTQLNPNHN PNPKKKQKQF HHTSNGRHID ESPAVTQTAS DDAYSFNQRP IESTTNVDGL NFGGYLTFNV
101: VSYNKGEVNE LRSRLLAEVE QIRNLKDRIE SGQLSTTNPR SQGKSKKLSG NKRPTPSGSS KDPKKLPNGV ENRNFGNPVG GGGVKAIGTE SMMKECRQIL
201: AKLMKHKNGW IFNIPVDAEA LGLHDYHQII KRPMDLGTVK SNLAKNFYPS PFEFAADVRL TFNNALLYNP KTDQVNGFAE QLLGRFEDMF RPLQDKMNKL
301: EGGRRDYHPV DELQGSSWNH IPTPERVKKP KATPVPHISK RQERMQNHSS ASTPSLPVPP PNPPARQQSP LSTPSPVRAP PSKPESAAKV PAMGKQPKPR
401: AKDPNKREMN MEEKHKLGVG LQSLPQEKMP QLVQIIRKRN EHLAQDGDEI ELDIEALDTE TLWELDRFVT NWKKMVSKTK RQALMINNLG PPSASAAASA
501: ATTSVAEADG PTTSEKNDSF KKPKKGDVGE EDVEIEDDEP ATHFPPVEIE KDEGGGRDQE NGGGGSSSSS SSSSSSSGSS SSSDSDSGSS SGSDSDADDA
601: HS

Best Arabidopsis Sequence Match ( AT5G65630.1 )
(BLAST)

001: MAPAVFATLN EPSYQEQCGA VFMRKFTNQS VTENTNNLPL FNPNPNPNFE RSNSSKQCDD SSEFGSYATF NLAGYTSSQL RELKKRFTSE LKQIRILRER
101: IESGTFETQQ GYTIPEVPAV RSAPLNNFTG EKNDLGPKKK KQKKNVSGLK RSNQFGPSDP ESEKLLAGML NTCSQILVKL MKHKWAWVFN TPVDVVGLGL
201: HDYHQVVKKP MDLGTVKLNL DKGFYVSPID FATDVRLTFD NAMTYNPKGQ DVYFMADKLL DHFDGMFNPA FKKFEAQQLK LTGSSSRPEP DFKPDFKQRQ
301: WNQNPPMVAN PRKGTEQISI AKKLDSVKPP QPTLPPQLVE PSRVQSPSPP PPPPVIQPEL PQPQPPPPQL EIEVEAPPDV SEVSKGRKGK LPKPKAKDPN
401: KRLMTMEEKS KLGMNLQDLP PEKLGQLLQI LRKRNGHLAQ DGDEIELDIE AVDNETLWEL DRFVTNYKKM ASKIKRQGFI RNVSTPPRNM ASVAEMGSAE
501: KRTRRGDAGE EDVDIGEDIP IEDYPSVEIE RDGTAVAAAA SSGSSSSGSS SSSGGSSSSS DSGSGGSSSG SDSDADSVQS PFVEAKEAQC

Arabidopsis Description

GTE7Transcription factor GTE7 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y214]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.